Gene RSP_2272 details

Gene Information

• Locus tag: RSP_2272
• Symbol: ampD
• ID: 3719802
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodobacter sphaeroides 2.4.1
• Kingdom: Bacteria
• Replicon accession: NC_007493
• Strand: +
• Start bp: 890052
• End bp: 890723
• Gene Length: 672 bp
• Protein Length: 223 aa
• Translation table: 11
• GC content: 74%
• IMG OID: 640070445
• Product: N-acetylmuramoyl-L-alanine amidase
• Protein accession: YP_352328
• Protein GI: 77462824
• COG category: [V] Defense mechanisms
• COG ID: [COG3023] Negative regulator of beta-lactamase expression

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.421086
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGCCTCT CGCCCAATTG CGGGCCGCGG CGCGAGGGTG CGCGGCCCGA TCTCGTGGTG 
ATCCATTACA CGGCCATGGC CAGCGCCGAG GCCGCCCGCG TCCGGCTCTG CGATCCGGCG 
GCGGAAGTCT CCGCCCACTG GCTGGTCCCG GAGCGGGGTG AGCCGCTGGC CCTGGTGCCG 
GAGGAGCTGC GCGCCTGGCA CGCGGGGGCG GGGTCCTGGG GAGGCGTGAC GGATGTCAAC 
TCGCGCTCGA TCGGGATCGA GCTCGCCAAT CCCGGCGACA GGCCCTTTTC CGAGCCGCAG 
ATGGCGGCGC TGGAGCGGCT GCTGGCGGGG ATCCTCGCAC GGTGGCGGAT CCCGCCCGCG 
CGGGTGATCG GCCATTCCGA CATGGCGCCG GAGCGGAAAT GCGATCCGGG ACCGCGCTTC 
GACTGGCGCC GTCTGGCCCG CGGCGGGCTC TCGGTCTGGC CCTCGGACGG CTGTCCGCCT 
GCGGAGGCGG AGACCTTTGC CGCTTCGGCC CGCGCCTTCG GCTATCCCGC CGTGGAGGCG 
GAGCTTCTGC TCGCGGCGGT CCGCCTGCGG TTCCGGCCCT GGGCGCGGGG GCCGCTCACG 
GGCGAGGACG CGGGGGTGAT GGCCGATCTT GCGGCGCGCT ATCCGGTTGA CGGAGAGACG 
TCCCAAGCGT AA 

 

Protein sequence

MSLSPNCGPR REGARPDLVV IHYTAMASAE AARVRLCDPA AEVSAHWLVP ERGEPLALVP 
EELRAWHAGA GSWGGVTDVN SRSIGIELAN PGDRPFSEPQ MAALERLLAG ILARWRIPPA 
RVIGHSDMAP ERKCDPGPRF DWRRLARGGL SVWPSDGCPP AEAETFAASA RAFGYPAVEA 
ELLLAAVRLR FRPWARGPLT GEDAGVMADL AARYPVDGET SQA