| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSP_2184 |
|---|
| Symbol | betA |
|---|
| ID | 3719654 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides 2.4.1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007493 |
|---|
| Strand | + |
|---|
| Start bp | 790120 |
|---|
| End bp | 791766 |
|---|
| Gene Length | 1647 bp |
|---|
| Protein Length | 548 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640070353 |
|---|
| Product | choline dehydrogenase |
|---|
| Protein accession | YP_352237 |
|---|
| Protein GI | 77462733 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGATT ACATCATCGT CGGCGCCGGC TCGGCCGGCT GTGCCATGGC CTATCGCCTC
GGCGAGGCGG GCCGCTCGGT GCTGGTCATC GAGCATGGCG GCACGGATGC CGGGCCCTTC
ATCCAGATGC CCGCGGCGCT CTCCTATCCG ATGAACATGG GGATCTACGA CTGGGGCCTG
AAGACCGAGC CCGAGCCGCA TCTGGACGGG CGCGTGCTCG CCACGCCGCG CGGCAAGGTG
ATCGGCGGCT CGTCCTCGAT CAACGGCATG GTCTATGTCC GCGGCCACGC GCGCGACTTC
GACCATTGGG CCGAGAGCGG GGCCACCGGC TGGGGCTTTG CCGATGTGCT GCCCTATTTC
AAGCGGATGG AGAACTGGCA CGTCCCCGGC GATGTCGAGT GGCGCGGCCA TGACGGGCCG
CTGCATGTGA CGCGCGGCCC GCGCTCCAAT CCCCTGTTCA ACGCCTTCAT CGAGGCGGGG
CGGCAGGCGG GCTATCCGGT GACCGACGAT TACAACGGCG CGGCGCAGGA GGGCTTCGGC
CCGATGGAGG CCACGATCTG GCAGGGCCGG CGCTGGTCGG CCGCCAATGC CTATCTCAGG
CCCGCGATGA AGCGGTTCGG GGTCCAGCTC ACCCGCGCCC TCGCGCTGAA GGTGGTGATC
GAGGAAGGCC GTGCCGTCGG CGTCGAGGTG CAGCGCCGCG GCGGCCGCGA GGTGATCCGG
GCCGGCCGCG AGGTGATCCT CGCCGCCTCC TCGCTCAACA CGCCGAAGCT TCTGATGCTG
TCGGGCATCG GGTCCGCCGC GCATCTGGCC GAGCACGGGA TCCCGGTCGT GGCCGACCGG
CCGGGCGTGG GCCAAAACCT CCAGGATCAT CTGGAGGTCT ACATGCAGTT CGCGAGCCTC
CAGCCGGTCA CGCTCTTCAA GCACTGGAAC CTGCGCGGCA AGGTCAGCAT CGGCGCGCAG
TGGCTGTTTA CCGGGCGCGG GCTCGGGGCC TCGAACCAGT TCGAGGCCTG CGCCTTCATC
CGCTCGAAGC CGGGCGTGGA GTATCCCGAC ATCCAGTATC ACTTCCTGCC CATTGCCGTG
CGCTACGACG GCAAGGCCGC CGCCGAGGGC CACGGCTTCC AGGTGCATGT GGGGCCGATG
CGCTCGCCCT CGCGCGGGTC GGTGACGCTG CGCTCGGCCG ATCCCGAGGC GCCGCCGGTG
ATCCGCTTCA ACTACATGTC GACCGAAGAG GATTGGCAGG ACTTCCGCCG CTGCGTCCGC
CTCACGCGCG AAATCTTCGG GCAGGAGGCT TTCAAGCCCT TCGTCCGGCA CGAGATCCAG
CCGGGGGCGG CCTGCGCTTC GGACGCGGAG ATCGACGCCT TCATCCGCGA GCATGTCGAG
AGCGCCTATC ACCCCTGCGG GACGGCGCGG ATCGGGCGGG CGGACGATCC GATGGCGGTC
GTCGATCCCG AGTGCCGGGT GATCGGGGTC GAGGGGCTGC GCGTGGCCGA CAGTTCGATC
TTCCCGCGGG TGACGAACGG CAACCTCAAC GCGCCCTCGA TCATGGTGGG CGAGAAGGCG
TCCGACCATA TCCTCGGCCG GACCCCGCTC GCGCCGCTGA ACCTCGAGCC GGTGACGAAC
CCGAACTGGC GCACGGCCCA ACGCTGA
|
|---|
| Protein sequence | MFDYIIVGAG SAGCAMAYRL GEAGRSVLVI EHGGTDAGPF IQMPAALSYP MNMGIYDWGL
KTEPEPHLDG RVLATPRGKV IGGSSSINGM VYVRGHARDF DHWAESGATG WGFADVLPYF
KRMENWHVPG DVEWRGHDGP LHVTRGPRSN PLFNAFIEAG RQAGYPVTDD YNGAAQEGFG
PMEATIWQGR RWSAANAYLR PAMKRFGVQL TRALALKVVI EEGRAVGVEV QRRGGREVIR
AGREVILAAS SLNTPKLLML SGIGSAAHLA EHGIPVVADR PGVGQNLQDH LEVYMQFASL
QPVTLFKHWN LRGKVSIGAQ WLFTGRGLGA SNQFEACAFI RSKPGVEYPD IQYHFLPIAV
RYDGKAAAEG HGFQVHVGPM RSPSRGSVTL RSADPEAPPV IRFNYMSTEE DWQDFRRCVR
LTREIFGQEA FKPFVRHEIQ PGAACASDAE IDAFIREHVE SAYHPCGTAR IGRADDPMAV
VDPECRVIGV EGLRVADSSI FPRVTNGNLN APSIMVGEKA SDHILGRTPL APLNLEPVTN
PNWRTAQR
|
|---|
| |