| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSP_1474 |
|---|
| Symbol | nspC |
|---|
| ID | 3718769 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides 2.4.1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007493 |
|---|
| Strand | + |
|---|
| Start bp | 58616 |
|---|
| End bp | 59713 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640069622 |
|---|
| Product | putative carboxynorspermidine decarboxylase protein |
|---|
| Protein accession | YP_351517 |
|---|
| Protein GI | 77462013 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01047] carboxynorspermidine decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCCAGA CACCTTACTA TCTGATCGAC GCGGACAGGC TGCGGCAGAA CATGGCGGTC
GTGGACCGGC TGCGGCAGGC CTCGGGAGCG AAGGCGCTTC TGGCGCTGAA ATGCTTCGCC
ACCTGGCCCG CCTTCGAGCA TATGCGCGAC CATATGGACG GCACGACCTC CTCGTCGCTC
TACGAGCTGC GGCTCGGGCG CGAGAAGTTC GGCAAGGAGA CTCACGCCTA TTCGGTGGCC
TGGCCCGATC ACGAGATCGA CGAGGCCGTG GGTTATGCCG ACAAGATCAT CTTCAACTCG
GTGGGCCAGC TCGCGCGCTT CCGCAACCGC ACCGGGGGCA TCGCCCGCGG GCTGCGGCTG
AACCCGGGGC TCTCGACCTC GGGCTTCGAC CTGGCCGATC CGGCGCGGCC CTTCTCGCGG
TTGGGCGAAT GGAGCGCGGA GAAGATCGAG GCGGTGCTGC CCGACATCTC GGGCGTGATG
ATCCATTACA ATTGCGAGAA TGCCGATGTC GACCTGTTCG AACGGCAGCT CTCCGAGATC
GAGGGCCGCT TCGGCGCGAT CCTCGACCGG CTGGACTGGG TGAGCCTCGG CGGCGGCATC
CATTTCACGG GCGAGGGCTA TCCGGTGGAC CGGCTGGCCG CGCGGCTGAA GGCCTTCGCC
GCGGCGCATG GGGTGCAGGT CTATCTCGAG CCGGGCGAGG CCGCGATCAC GCGCTCGGCC
ACGCTCGAGG TGACGGTGCT GGACCTGCTC GACAACGGCA AGCAGCTGGC CATCGTGGAC
AGCTCGGTCG AGGCGCACAT GCTGGATCTG CTGATCTACC GGCAGTCGGC CAAGGTTGAA
CCCGACGCCG GAGATCATAG CTACATGGTC TGCGGCAAGT CCTGCCTTGC GGGGGACATC
TTCGGCGAGT TCCGGTTCGC CCAGCCGCTG CAGGTGGGCG ACCGCCTCTC CATCGCGGAT
GCCGCGGGCT ACACGATGGT GAAGAAGAAC TGGTTCAACG GGGTGAAGAT GCCCTCGATC
GTGATCCGCG AGCCCGACGG ATCGCTGCGC GTGGCGCGCG AGTTCGGCTA TGGCGACTAT
GCCTCGAGCC TCGGCTGA
|
|---|
| Protein sequence | MIQTPYYLID ADRLRQNMAV VDRLRQASGA KALLALKCFA TWPAFEHMRD HMDGTTSSSL
YELRLGREKF GKETHAYSVA WPDHEIDEAV GYADKIIFNS VGQLARFRNR TGGIARGLRL
NPGLSTSGFD LADPARPFSR LGEWSAEKIE AVLPDISGVM IHYNCENADV DLFERQLSEI
EGRFGAILDR LDWVSLGGGI HFTGEGYPVD RLAARLKAFA AAHGVQVYLE PGEAAITRSA
TLEVTVLDLL DNGKQLAIVD SSVEAHMLDL LIYRQSAKVE PDAGDHSYMV CGKSCLAGDI
FGEFRFAQPL QVGDRLSIAD AAGYTMVKKN WFNGVKMPSI VIREPDGSLR VAREFGYGDY
ASSLG
|
|---|
| |