| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSP_1177 |
|---|
| Symbol | xylB |
|---|
| ID | 3718170 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides 2.4.1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007493 |
|---|
| Strand | - |
|---|
| Start bp | 2944987 |
|---|
| End bp | 2946423 |
|---|
| Gene Length | 1437 bp |
|---|
| Protein Length | 478 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 640072408 |
|---|
| Product | xylulose kinase |
|---|
| Protein accession | YP_354262 |
|---|
| Protein GI | 77464758 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1070] Sugar (pentulose and hexulose) kinases |
|---|
| TIGRFAM ID | [TIGR01312] D-xylulose kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATATCG GTCTCGATCT CGGCACCTCG GGGCTCAAGG GCATCCTCAT CGACGAGGAG
CAGCGCGTCC TCGCCGAAGC GGTGGCGCCG CTCGCCGTGA GCCGTCCGCA CAAGGGCTGG
TCCGAACAGT CGCCCGCCGA CTGGATCGCC GCCGCCGAGG CGGTGATGGA TCAGCTGGCA
GCCCATGGGC TCTCGGACGT GAAGGGCATC GGCCTCTCGG GCCAGATGCA TGGCGCGACC
CTGCTCGATG CCTCGGACGA GGTGCTCCGC CCCTGCATCC TGTGGAACGA CACCCGCAGC
CATGCCGAGG CGGCGGCGCT CGACGCCGAC CCGCGCTTCC GGGCCGTCAC GGGCAACATC
GTCTTTCCGG GCTTCACGGC GCCGAAGCTC GTCTGGGTCG AGCGGCACGA GCCGGCGATC
CGCGAGCGGG TGGCCAAGGT GCTTCTGCCC AAGGACTATC TGCGGCTCTG GCTGACCGGC
GAGCATGTGG CCGAGATGTC GGACGCGGCC GGGACGAGCT GGCTCGACGT GGGCGCACGC
GACTGGTCGG ACGCGCTCCT CGCCGCGACC GGCCTCACGC GCGATGCGAT GCCGCGGCTG
GTGGAGGGCT CGGCCGTCTC GGGTGCGCTG CGGCCCGCGC TGGCCGCCCG CTGGGGGTTG
CCCCAGGGCG TGGCGGTCGC GGGCGGGGGC GGCGACAATG CCGCCTCGGC GGTGGGGGTG
GGCGTCGTGC GCGCGGGCGA GGCTTTCGTC AGCCTCGGCA CCTCGGGCGT GCTCTTTGCC
GCCAACGACG GCTACCAGCC CGCGCCCGAG ACCGCGGTCC ATACCTTCTG CCACGCGCTG
CCCGGCGCCT GGCACCAGAT GGGGGTGATC CTCGCCGCGA CCGACGCGCT CAACTGGTAT
GCGCGCCTCG TGGGACAGGA AGCCTCGGCC CTGACGAAGG AACTGGGCGG CCTTCAGGCC
CCCGGCCGGA CCCTGTTCCT GCCCTATCTC GGCGGCGAGC GGACGCCGCT CAACGATGCC
GCGATCCGGG GCGCCTTCAC GGGGCTCGAA CATGCGACCG ACCGGGCGGC GGGCACCCGC
GCCGTGCTCG AGGGCGTGAC CTTCGCCATC CGCGACTGCC GCGACGCGCT GGCCGCCACC
GGCACCCGGC TCGAGAGCCT GATCGCCGTG GGCGGCGGCT CGCGCTCGGA CTACTGGCTC
TCGGCCATCG CCACCGCGCT CGACGTGCCG GTTCTATTGC CCGCGGCAGG CGATTTCGGC
GGCGCCTTCG GAGCCGCGCG GCTTGCGCTC ATGGCCGCCA CCGGAGCCGG GGCCGAGATC
GCGACCCTGC CGCCCATCGC CCGGACCCTC TCGCCCGACC GCGGCCTGAC CGCCGCCTTC
GACGACGCCC ACGCGCGCCA TCGCGCCGCC CAGACAGCCA TCAGGAGCCT TTCATGA
|
|---|
| Protein sequence | MYIGLDLGTS GLKGILIDEE QRVLAEAVAP LAVSRPHKGW SEQSPADWIA AAEAVMDQLA
AHGLSDVKGI GLSGQMHGAT LLDASDEVLR PCILWNDTRS HAEAAALDAD PRFRAVTGNI
VFPGFTAPKL VWVERHEPAI RERVAKVLLP KDYLRLWLTG EHVAEMSDAA GTSWLDVGAR
DWSDALLAAT GLTRDAMPRL VEGSAVSGAL RPALAARWGL PQGVAVAGGG GDNAASAVGV
GVVRAGEAFV SLGTSGVLFA ANDGYQPAPE TAVHTFCHAL PGAWHQMGVI LAATDALNWY
ARLVGQEASA LTKELGGLQA PGRTLFLPYL GGERTPLNDA AIRGAFTGLE HATDRAAGTR
AVLEGVTFAI RDCRDALAAT GTRLESLIAV GGGSRSDYWL SAIATALDVP VLLPAAGDFG
GAFGAARLAL MAATGAGAEI ATLPPIARTL SPDRGLTAAF DDAHARHRAA QTAIRSLS
|
|---|
| |