| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSP_1131 |
|---|
| Symbol | dapD |
|---|
| ID | 3720829 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides 2.4.1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007493 |
|---|
| Strand | - |
|---|
| Start bp | 2894481 |
|---|
| End bp | 2895305 |
|---|
| Gene Length | 825 bp |
|---|
| Protein Length | 274 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640072361 |
|---|
| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
|---|
| Protein accession | YP_354216 |
|---|
| Protein GI | 77464712 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
|---|
| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTATT CCGCGCTCGA AGCCGCCATC GAAGCCGCCT GGGAGGCGCG CGAGACGATC
ACCCCGGCCA CCAAGGGCGA GACCCGCGAG GCCATCGAGG CGACGCTCGA GGCGCTCGAC
AAGGGCAGCC TGCGGGTGGC CGAGAAGCGC GGCGCGGACT GGCATGTCAA CCAGTGGGCG
AAGAAGGCCG TGCTGCTCGG CTTCCGGCTG AAGGACATGG AAGTGCAGAC GGGCGGCCCG
CAGGCAGGGA CCTGGTGGGA CAAGGTCGAC AGCAAGTTCG CCCAGTGGGG CGAGGCGCAA
TGGAAGGCCG CGGGCTTCCG CGCGGTGCCG AACTGCGTCG TCCGTCGCTC GGCCTATATC
GCCAGGGGCG TGGTTCTGAT GCCCTCGTTC GTGAACCTCG GCGCCTATGT CGATGAGGGC
ACCATGGTCG ACACCTGGGC CACCGTCGGC TCCTGCGCGC AGATCGGCAA GAACGTGCAC
CTGTCGGGCG GCGTCGGCAT CGGCGGCGTG CTGGAGCCGA TGCAGGCCGG CCCCACCATC
ATCGAGGACA ACTGCTTCAT CGGCGCGCGT TCGGAAGTGG TCGAGGGCTG CATTGTCCGC
GAGGGCTCGG TGCTGGGCAT GGGCGTCTTC ATCGGCAAGT CGACGAAGAT CGTGGATCGC
GAGACGGGCG AGGTCATGTA TGGCGAAGTG CCCGCAGGCT CGGTCGTCGT GGCGGGGTCG
ATGCCCTCGA AGGGCGGCGT GAACCTCTAT TGCGCCGTGA TCGTGAAGCG CGTGGATGCG
CAGACGCGCT CGAAGACCTC GATCAACGAG CTGCTGCGGG ACTGA
|
|---|
| Protein sequence | MSYSALEAAI EAAWEARETI TPATKGETRE AIEATLEALD KGSLRVAEKR GADWHVNQWA
KKAVLLGFRL KDMEVQTGGP QAGTWWDKVD SKFAQWGEAQ WKAAGFRAVP NCVVRRSAYI
ARGVVLMPSF VNLGAYVDEG TMVDTWATVG SCAQIGKNVH LSGGVGIGGV LEPMQAGPTI
IEDNCFIGAR SEVVEGCIVR EGSVLGMGVF IGKSTKIVDR ETGEVMYGEV PAGSVVVAGS
MPSKGGVNLY CAVIVKRVDA QTRSKTSINE LLRD
|
|---|
| |