| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSP_1009 |
|---|
| Symbol | |
|---|
| ID | 3720725 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides 2.4.1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007493 |
|---|
| Strand | + |
|---|
| Start bp | 2767269 |
|---|
| End bp | 2769227 |
|---|
| Gene Length | 1959 bp |
|---|
| Protein Length | 652 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 640072237 |
|---|
| Product | OmpA family outer membrane protein |
|---|
| Protein accession | YP_354093 |
|---|
| Protein GI | 77464589 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCTGA AACCGAGCCT CCTTGCCTCC GCCGCCTTCG TCACGGCCGC GGCGCTTGCC
GTGGTGGGGG CCTCCGTGGC CGCGACCGTG ATCGAGAACC GATCCGTCGA GGCCGTGCAG
TCGCGGCTCA CCGCCGCGGG CCTCACCTTC GTCGAGGTCC ATGCCGACGG GCTGCAGGTC
TGGCTGCGCG GCACCGCCCC GAACGAGGCC ACGCGCTTCC GCGCGGTGAA CCTCGCGGGG
GGGGCCGTCG ATGCCACGCG GCTGCGCGAC GCGCTCGAGG TGACGCCCGT GCGCGAGATC
GAGGCGCCGC GCTTCTCGGT CGAGATGCTG CGCAACGACG ACGGCGTGTC GCTGATCGGC
CTGCTGCCCG AGGCGGGCGG CACCGAGGAT CTGGCCAATG CCGCGCGCGG CCTCGGCACC
GGGCTTCAGG TGGCCGACAT GCTGGAGACT GCCGATTTCC CGACGCCCGA GGGCTGGTCC
TCGGCGCTCG CCTTCGGGCT CGAGGCCCTG CGCCTCCTGC CGCAATCCAA GATCTCGGTC
GATGCCGACC GGGTCTCGAT CACGGCCATC TCGAACAGCG AGGACGAGAA GCGCAAGCTC
GAGGGGCAGC TTTTGCGGCT CGCGCCAGAG GGGCTGGAGC TCGTCATGAA CATCTCGGCG
CCGCGGCCCG TGCTCACGCC CTTCACGCTG CGCTTCGTGA TGGACGAGGA GGGTGCGCGC
TTCGACGCCT GTTCGGCCGA CACGACGCGG GCGCGCGACC GGATCCTCGC GGCCGGCACC
GCGGCCGGCG TGACCGAGGA GACCACCTGC ACCATCGGGC TGGGCGTGCC CTCGCCCCGC
TGGGCCGAGG CCGCCGAGGC GGGCGTGCGG ACCGTGGCCG AGCTCGGCGC AGGCAGCGTG
ACCTTCTCGG ACGCCGACGT GACGCTCGAG GGCAAGCCGG GCACGCCGCG CGCCCAGTTC
GACCGGGCGG TGGGCGCGCT CGAGGCGGCG CTGCCCAAGG TCTTCTCGCT CGAGGCGACG
CTGCCCCCTG CCCCGCAGGC GGTGGCCGAG GGCCCGGCCG AGTTCCGCGC CACCCTGTCA
GATCAGGGCC GGGTCGAGCT GTCGGGGCGC GTGACCGACG AGCTGACGCG CAAGGCGGTG
GACAGTTTTG CCCGCGCCCA GTTCGGCGCG AGCAAGGTGC GCAGCGCGAC GCGGCTCGAC
GGCGAACTGC CCGAGGGCTG GCCCACCCGG GTCCTCGCGG GGCTCGAGTC GCTGGCGCAG
CTGCATTCGG GCGAGCTTCT GGTGCGGGCC GACACGGTCG AGGTGACGGG CGTCACCGGC
TCGAAACAGG CCAGCGGCCG CATCTCGCAG GTGCTGTCGG CGCGGCTGGG CCAGGGCCGC
AGCTTCAAGG TGGACATCGT CTACGACAAG AAGTTCGACC CCGAGGCCGC GCTGCCCACC
GCGCAGGAAT GCATGTCCCG CATCCGCCGC GTGCTCGCCG GGCAGAAGAT CACCTTCGAG
CCGGGCTCGG CCGAGATCGA CCAGAGCGCG CGGGGCACGC TCGACGGGCT GGCCGAGGTG
TTCAAGGTCT GCAAGGCCAT GCCGCTCGAG ATCTCGGGCC ATACCGACAG CCAGGGCAGC
GAGGGCGGCA ACAAGGCCCT GAGTCAGGCC CGGGCCGAGG CGGTGCTTCT CGCGCTGCAG
GGCCGGCGCG TGGACGTGGG CCGGATGAAG GCCGTGGGCT ACGGCGAAGA GCGCCCGATC
GCCGACAACG GCAAGGAGGA GGGCCGCGAG GCCAACCGCC GGATCGAGTT CACGTTGCTG
GGCGAGGACG GCAATCCGGT TGACGACGCG GCTCCGGTCG TGGAGGAAAC GGCGGAAGCC
ACGCCGTCCG ACGGCGCGGA GGCCGCCGCG GACGACGAAC CCTCGGCGGC GCCGACCGAA
ATGACGCGGC GCCCGAAGCG CCGTCCCGCG GAGGACTGA
|
|---|
| Protein sequence | MRLKPSLLAS AAFVTAAALA VVGASVAATV IENRSVEAVQ SRLTAAGLTF VEVHADGLQV
WLRGTAPNEA TRFRAVNLAG GAVDATRLRD ALEVTPVREI EAPRFSVEML RNDDGVSLIG
LLPEAGGTED LANAARGLGT GLQVADMLET ADFPTPEGWS SALAFGLEAL RLLPQSKISV
DADRVSITAI SNSEDEKRKL EGQLLRLAPE GLELVMNISA PRPVLTPFTL RFVMDEEGAR
FDACSADTTR ARDRILAAGT AAGVTEETTC TIGLGVPSPR WAEAAEAGVR TVAELGAGSV
TFSDADVTLE GKPGTPRAQF DRAVGALEAA LPKVFSLEAT LPPAPQAVAE GPAEFRATLS
DQGRVELSGR VTDELTRKAV DSFARAQFGA SKVRSATRLD GELPEGWPTR VLAGLESLAQ
LHSGELLVRA DTVEVTGVTG SKQASGRISQ VLSARLGQGR SFKVDIVYDK KFDPEAALPT
AQECMSRIRR VLAGQKITFE PGSAEIDQSA RGTLDGLAEV FKVCKAMPLE ISGHTDSQGS
EGGNKALSQA RAEAVLLALQ GRRVDVGRMK AVGYGEERPI ADNGKEEGRE ANRRIEFTLL
GEDGNPVDDA APVVEETAEA TPSDGAEAAA DDEPSAAPTE MTRRPKRRPA ED
|
|---|
| |