| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSP_0709 |
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| Symbol | cpdB |
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| ID | 3718187 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodobacter sphaeroides 2.4.1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007493 |
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| Strand | + |
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| Start bp | 2453997 |
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| End bp | 2455889 |
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| Gene Length | 1893 bp |
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| Protein Length | 630 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 640071925 |
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| Product | 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
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| Protein accession | YP_353786 |
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| Protein GI | 77464282 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
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| TIGRFAM ID | [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.532033 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGACGAG AGGACGATCA CCGCGAGAGG CGGCCGCAGG TGCTGGCGGA GCCGCCCGCA
GACCCGGCCC GGCTCCGGCT GCGCCTGCTC GCCACGACGG ACCTTCATGC CGAGATCCTG
CCCTACGACT ATCATGCCGA CCGGCCGGCG CCGGGGCTGG GCCTCGCCAC CACCGCGACC
CTCATCGCCG AGGCGCGCGC CGAAGCCACG AACACGCTGC TCTTCGACAA TGGCGATCTG
CTGCAGGGCA CGCCGATGGG CGATCTCTGG GCGCAGCGGG CGCCCGAAGG GATCCATCCC
CTGATCGCGG CCATGAAGGC CCTCGGCTAC GATGCGGCGA CGGTCGGCAA CCACGACTTC
GACTACGGTC TGGATCATCT CGACCGCACG CTCGCCGACG CGACCTGGCC CGTCGTCTCG
AGCAATGCGT TGCTGACGCT CGGAGCCGAG CCTGCGGCAG ACCGGACGCT GCTGCCCCCG
GCGGCGATCC TCGACCGCGA GATGATCGAC GAGGCGGGGC AGCCGCACCG TCTGCGGATC
GGGGTGCTGG GCCTCCTGCC GCCGCAGGTG CCGGTGTGGA ACCGCGCCGT GCTGGGCGAC
CGGCTGCAGG TGCGCGACAT CGCCGAGGCG GCGGCGGGCC ATCTGGCGGC GCTTCGGGCC
GAGGGCTGCG ATCTCGTCGT GGCGCTCTGC CATTCGGGGA TCGGCGCGCC CGAGGCCCAG
CCCGAGCAGG AGGATGCGGC GCTGCCCGTG GCGGCGCTCG AGGGGATCGA CGCGGTGGTG
ACGGGCCACA GCCACCTCGT CTTTCCCGCG CCGGGCTTCC CGCCGCGGCC CGGAGCCGAT
GCCACGCTGG GGCGGCTCGC GGGCAAGCCC GCCGTAATGG CCGGCGCCCG CGGCTCGCAT
CTGGGGGTGA TCGATCTCCT GCTGGCCCGG GACGCCCAAG GCTGGCGCGT GGCGGAGGCG
CAGGTCGAGG CCCGCCCGGT GCGGCGCGCG GGAAGCCCCG TGCAGGCCTG CCCGAAGCTC
ACCGCGCTTG CCGCGCCCGC CCATGCCGAG ACCCTCCGCC ACATCCGCCG CCCCATCGGC
CACTCGACGG TGCGGATCGC GAGCCATTTC GCCCTCGTGG CGCCCACGGC CTCGCTGTCG
CTCGTAGCCG AGGCGCAGGC CGCCCATCTG GCAGAGCACA TCGCGGGAAG CCCCCTCGCG
GGCCTGCCGA TCCTGTCGGC GGCGGCGCCC TTCAAGGCGG GGGGGCGCGC CGGGCCTGCC
CATTACAGCG ACGTGCCGGC TGGACCGCTC GCGCTGCGCC ATGCGGTCGA TCTCTATATC
TACCCGAACC TCATCGCCGC CGTCCGGCTG ACCGGCGCCC AGATCGCGGA ATGGCTCGAG
CGGGCCGCGA GCCTCTTCGC CCGGATCGAA CCGGGGGGAG TCGACCAGCC GCTCCTCGAT
CCCGAGATGC CGAGCTACGG CTTCGACCCG ATCCAGGGAC TGACCTTCTC GATCGACTTG
GCCCAGCCCG CGCGCTACGA CGCCCACGGC CGGATCGTCC GCCCCGAGGC GCGGCGCATC
CTCGACCTGC GCTGGCAGGA CCGGCCGCTG GACCCGACGC AGCCCTTCGC GGTGGCCACC
AACAGCTACC GCGCCGCCAG CTGCAGCCGG CAGTTCGGCC CCCTGCCGAC CTGGATCGGC
ACCGAGCCGA TCCGCGACAT CCTGAGCCGC CACATCTCCC GGACCTCGCC GCTGGCCCCC
GAGGTGCCCC GCTTCTGGCG CTTCCGGCCG ATGCCCGGCA CCACGGCGAT CTTCGAGACG
GCCCCCGCCC CGGCCGAGCC GCCGCCCTTC CTCGATCTGA CCCGGCTCCC TTCCTCGCCT
GCGGGGTTCT CGCGCTTCCG CCTCGCCCTC TGA
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| Protein sequence | MRREDDHRER RPQVLAEPPA DPARLRLRLL ATTDLHAEIL PYDYHADRPA PGLGLATTAT
LIAEARAEAT NTLLFDNGDL LQGTPMGDLW AQRAPEGIHP LIAAMKALGY DAATVGNHDF
DYGLDHLDRT LADATWPVVS SNALLTLGAE PAADRTLLPP AAILDREMID EAGQPHRLRI
GVLGLLPPQV PVWNRAVLGD RLQVRDIAEA AAGHLAALRA EGCDLVVALC HSGIGAPEAQ
PEQEDAALPV AALEGIDAVV TGHSHLVFPA PGFPPRPGAD ATLGRLAGKP AVMAGARGSH
LGVIDLLLAR DAQGWRVAEA QVEARPVRRA GSPVQACPKL TALAAPAHAE TLRHIRRPIG
HSTVRIASHF ALVAPTASLS LVAEAQAAHL AEHIAGSPLA GLPILSAAAP FKAGGRAGPA
HYSDVPAGPL ALRHAVDLYI YPNLIAAVRL TGAQIAEWLE RAASLFARIE PGGVDQPLLD
PEMPSYGFDP IQGLTFSIDL AQPARYDAHG RIVRPEARRI LDLRWQDRPL DPTQPFAVAT
NSYRAASCSR QFGPLPTWIG TEPIRDILSR HISRTSPLAP EVPRFWRFRP MPGTTAIFET
APAPAEPPPF LDLTRLPSSP AGFSRFRLAL
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