| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSP_0679 |
|---|
| Symbol | hemC |
|---|
| ID | 3718329 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides 2.4.1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007493 |
|---|
| Strand | - |
|---|
| Start bp | 2423236 |
|---|
| End bp | 2424180 |
|---|
| Gene Length | 945 bp |
|---|
| Protein Length | 314 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640071895 |
|---|
| Product | porphobilinogen deaminase |
|---|
| Protein accession | YP_353756 |
|---|
| Protein GI | 77464252 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0181] Porphobilinogen deaminase |
|---|
| TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACACACT CCATGCCCAC CCCCGCTGAA CCCCTCAAGA TCGGCACGCG CGGCTCGCCG
CTTGCGCTGG CTCAGGCCTA CGAGACCCGC AGCCGCCTGT CGGCCGCCTT CTCGCTGCCG
GAAGAGGCAT TCGAAATCGT GGTCATAAAA ACCACAGGTG ACAAGGTCTT GGACCGTCCG
CTCAAGGAGA TCGGCGGCAA GGGCCTGTTC ACCCGCGAGA TCGAGGAGGC CCTGCTGTCG
GGGGGAATCG ACATCGCGGT CCATTCGATG AAGGACATGC CGACGCTTCA GCCCGAGGGG
CTGATCCTCG ACACCTACCT CCCGCGCGAG GACACGCGGG ATGCCTTCAT CACCTTCGCC
GAGGGGGGGC TGGCGGATTT GCCGCAGGGG GCCACGGTCG GCTCGTCGAG CCTGCGCCGC
CGCGCGCAGC TGCTGAACAA GCGGCCGGAC CTGCAGGTGG TCGAGTTCCG CGGGAACCTC
CAGACCCGTC TGAAGAAGCT GAACGACGGG GTGGCGCGGG GCACCTTCCT CGCTATGGCC
GGGCTGAACC GGCTGAAGAT GAACGAGGTG CCGCGGGTGC CGATCGAGTC CGAGGAAATG
CTCTCTGCCG TGGCGCAGGG CGCCATCGGG ATCGAGCGCC GGACCGACGA TCCGCGGGCG
CAGGAGATGC TGGCCGCGAT CCACGACGTG CCCACGGGGC ACCGGCTCGC GGCCGAGCGC
AGCTTCCTTC TGAAGCTCGA CGGCTCGTGC GAGACGCCGA TCGCGGGGCT CGCGATCCTC
GAGGGCGATC AGCTGTGGCT GCGCGGCGAG ATCCTGCGGC CGGACGGGTC CGAGTCGATC
TCGGGCGAGA TCCGCGGTGC GATCGCGGAT GCGGCGGCCC TCGGGTCCGA GCTGGCCTCG
GAGCTTCTGG GCCGGGCGCC GGCCGACTTC TTCAGCTGGC GTTGA
|
|---|
| Protein sequence | MTHSMPTPAE PLKIGTRGSP LALAQAYETR SRLSAAFSLP EEAFEIVVIK TTGDKVLDRP
LKEIGGKGLF TREIEEALLS GGIDIAVHSM KDMPTLQPEG LILDTYLPRE DTRDAFITFA
EGGLADLPQG ATVGSSSLRR RAQLLNKRPD LQVVEFRGNL QTRLKKLNDG VARGTFLAMA
GLNRLKMNEV PRVPIESEEM LSAVAQGAIG IERRTDDPRA QEMLAAIHDV PTGHRLAAER
SFLLKLDGSC ETPIAGLAIL EGDQLWLRGE ILRPDGSESI SGEIRGAIAD AAALGSELAS
ELLGRAPADF FSWR
|
|---|
| |