| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSP_0547 |
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| Symbol | nifA |
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| ID | 3718056 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodobacter sphaeroides 2.4.1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007493 |
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| Strand | - |
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| Start bp | 2283761 |
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| End bp | 2285506 |
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| Gene Length | 1746 bp |
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| Protein Length | 581 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640071756 |
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| Product | NifA subfamily transcriptional regulator |
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| Protein accession | YP_353620 |
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| Protein GI | 77464116 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | [TIGR01817] Nif-specific regulatory protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.202829 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACACGT CCGCGGCACG GTCCGGCGCA GTGGCCGAAC GGGGTGAGGA ATATCTGACC
CTCGACGCGC TCTGCGAGAT CGCCAAGCTT CTGACCGGCG CGAGCGATCC GATCGCCTGC
ATGCCTGCAG TGTTCGGGGT GCTGGGCGCC TTCATGGGTC TGCGGCACGG CGCGCTCGCC
CTCCTGCAGG AGGGGGCGCA GGCCGAGACC CAGCGCAATG CCCGCCACGT CAATCCCTAT
GTGATCGCGG CCACCGCCTC GGGCGTGCCG CCCGCCGGGG CCGAGGCCCG CGCGATCCCC
GCGCAGGTGG CGCGGCATGT CTTCCGCAAC GGCGTGTCGC TCGTTTCCTG CGACATCCTC
GAGGAGTTCG GCGCCGAGGC GCTGCCGCCG GGCCTCGGCG ACAGCCGGCA GGCGCTGGTG
GCGGTGCCGA TCCGCGATCA GGCCAATTCG CCCTTCGTGC TGGGCGTGCT CTGCGCCTAC
CGCAGCCTCA AGGACAATGG CGCGCGCTAC CTCGACACCG ACCTGCGCGT CCTGAACATG
GTGGCGGCGG TGCTCGAACA GTCGATCCGC TTCCGCCGTC TCGTCGCCCG CGACCGCGAC
CGGATCGTGC AGGAGGCGCG CGAGGCGATC CGGGTCGCGG CCGAGGCGAC CGCGGGCCCG
CCCGTCGAGG CGCCGGCCGA GGCGCTCGAG GGGGTGATCG GCTCCTCCCC CGCCATCCAG
CGCGTGATCG GCCAGATCCG CAAGGTGGCG GGCACCCACA CGCCCGTCCT GCTGCGCGGC
GAGAGCGGCA CCGGCAAGGA GGTCTTCGCT CGCGCGCTCC ATGCGCTGTC CGAGCGGCGC
GACAAGGCCT TCATCAAGGT CAACTGCGCG GCGCTGAGCC AGTCGCTGCT CGAATCCGAA
CTGTTCGGAC ATGAGAAGGG CTCCTTCACC GGCGCCGTCC AGCAGAAGAA GGGCCGGTTC
GAGATGGCCG AGGGCGGCAC GCTGTTTCTC GACGAGATCG GCGAAATCAG CCTCGAGTTT
CAGGCCAAGC TCCTGCGCAT CCTGCAGGAG GGCGAGTTCG AGCGGGTGGG GGGCACGCGC
ACGCTGCGCG TCGATGTCCG GCTGGTGACG GCCACGAACA AGGATCTCGA GCGGGCGGTG
GCGAACGGCA CCTTCCGCGC CGACCTCTAT TTCCGCATCT GCGTGGTGCC CATCGTGCTG
CCGCCGCTGC GCGACCGCAA GGAGGACATC GGCCTTCTGG CGCAGGGGCT GCTCGAGCGG
TTCAACAAGC GCAACGGGAT GAAGAAGAAG CTGCATCCCT CGGCTGTGGC CGCGCTTGCC
CAGTGCAACT TCCCCGGCAA CGTGCGCGAG CTCGAGAACT GCATCGCGCG TGTGGCGGCC
CTCTCGCCCG AGACGGTGAT CCACGCCGAC GATCTGGCCT GCCACCACGA CCATTGCCTG
TCGGCCGATC TCTGGCGGCT CCAGACCGGA TCGGCCTCGC CGGTGGGCGG GCTCGCGCAG
GGGCCGCTGG AGCTGCCGGT TCTGGGCAGC CGCCCGCCCG CAGCCGCCCC CAGCGCGCCG
CCACCCCCGC CGCCGACCGT CCCCTCCGCG CCGCTCGACG GCGAGGCGGC CGAGCGCGAG
GCGCTGATCG AGGCGATGGA GCGAGCCGGC TGGGTGCAGG CCAAGGCCGC GCGCCTGCGC
GGCATGACCC CGCGCCAGAT CGGCTATGCG CTGAAGAAAT ACAACATCCG GGTCGAGAAG
TTCTAG
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| Protein sequence | MDTSAARSGA VAERGEEYLT LDALCEIAKL LTGASDPIAC MPAVFGVLGA FMGLRHGALA
LLQEGAQAET QRNARHVNPY VIAATASGVP PAGAEARAIP AQVARHVFRN GVSLVSCDIL
EEFGAEALPP GLGDSRQALV AVPIRDQANS PFVLGVLCAY RSLKDNGARY LDTDLRVLNM
VAAVLEQSIR FRRLVARDRD RIVQEAREAI RVAAEATAGP PVEAPAEALE GVIGSSPAIQ
RVIGQIRKVA GTHTPVLLRG ESGTGKEVFA RALHALSERR DKAFIKVNCA ALSQSLLESE
LFGHEKGSFT GAVQQKKGRF EMAEGGTLFL DEIGEISLEF QAKLLRILQE GEFERVGGTR
TLRVDVRLVT ATNKDLERAV ANGTFRADLY FRICVVPIVL PPLRDRKEDI GLLAQGLLER
FNKRNGMKKK LHPSAVAALA QCNFPGNVRE LENCIARVAA LSPETVIHAD DLACHHDHCL
SADLWRLQTG SASPVGGLAQ GPLELPVLGS RPPAAAPSAP PPPPPTVPSA PLDGEAAERE
ALIEAMERAG WVQAKAARLR GMTPRQIGYA LKKYNIRVEK F
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