| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSP_0531 |
|---|
| Symbol | nifU |
|---|
| ID | 3718040 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides 2.4.1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007493 |
|---|
| Strand | - |
|---|
| Start bp | 2268702 |
|---|
| End bp | 2269442 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 640071740 |
|---|
| Product | nitrogen fixation protein |
|---|
| Protein accession | YP_353604 |
|---|
| Protein GI | 77464100 |
|---|
| COG category | [C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0694] Thioredoxin-like proteins and domains
[COG0822] NifU homolog involved in Fe-S cluster formation |
|---|
| TIGRFAM ID | [TIGR02000] Fe-S cluster assembly protein NifU |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.035039 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGACG AAACCGGAAA GGCGCTGGAT CTCTTCTTCA ACCCGCGGAA CGCGGGGCCG
CTCGAGGCGG CCGATGCGGT GGGCACGGCG GGCAGCCTCG AGGTAGGCGA CGCGATCCGG
CTGATGCTGC GGATCGAGGC GGGCCGCGTG GCCGAGGCGC GGTTTCTGGC CTTCGGCGGG
GCCCATGCCA TCGCCTGCGG CTCGGCGCTG ACGGTGCTGG TGACGGGCCT CGATCTCGCC
GCCGCGCGCG CCGTCACGCC CGAGGAGATC GAGGCTGCCG TGGGCGGGTT GCCCGCACCG
CGGCGGCCGG CGGCCGCGCG GGCCTGGTCG GCGCTCCAGA TCGCGCTGGC GGCCTACGAG
GGCCGGACCT TCGTGGCGCC TGAGCCCGCG CCCGTTCCCG CGCCGGCCGC GGCCCCGGTC
AGGCTGCTCG CGCCGAAGCA CGACTCGCAG CCCCGGATCG TCCGCGATGT GCCGCTCGCG
CCCGCCGAGG AGGCGCGCCT GATCGCCGAG GTGATCGAGA GCGTGCGGCC GCGGCTGCGG
GCCGACGGGG GCGACGTGAC GCTGGTCGCG GTCGAGGGCT CGAAGGTGCG CGTCCATCTG
ACCGGGGCCT GCTCCGGCTG CCAGCTCGCC GCCCTGACGC TCGGCGGGCT GCAGAAGCGG
CTGGCCGATA CGCTGGGCCG GCCGATCCGG GTCATCCCCG AGGAGAAGCG GCCGCTCGTC
TCCATCGCGG GGGCGCGATG A
|
|---|
| Protein sequence | MLDETGKALD LFFNPRNAGP LEAADAVGTA GSLEVGDAIR LMLRIEAGRV AEARFLAFGG
AHAIACGSAL TVLVTGLDLA AARAVTPEEI EAAVGGLPAP RRPAAARAWS ALQIALAAYE
GRTFVAPEPA PVPAPAAAPV RLLAPKHDSQ PRIVRDVPLA PAEEARLIAE VIESVRPRLR
ADGGDVTLVA VEGSKVRVHL TGACSGCQLA ALTLGGLQKR LADTLGRPIR VIPEEKRPLV
SIAGAR
|
|---|
| |