Gene RSP_0030 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSP_0030 
Symbol 
ID3720165 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodobacter sphaeroides 2.4.1 
KingdomBacteria 
Replicon accessionNC_007493 
Strand
Start bp1732315 
End bp1734816 
Gene Length2502 bp 
Protein Length833 aa 
Translation table11 
GC content69% 
IMG OID640071226 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_353099 
Protein GI77463595 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGGAGA TGCAAAGCCT GCGCCATCGT CTGATCAGGC AACCCGGTCC GGTGTCCGGC 
GAGTGCTGGA TCGCCTTCTT CGATGGCGTG GCCCATCCGG TTCTCATCAA GAACGCGCAA
GGTCAGGTCA TCTTCGCCAA TCGCGCGGCC TGCGACCTGC TCGGTCGGGA TCGCAGCGGT
CTCGCCGGCG GTGCCGAGCA TGAGCTGGTG GCGGGCACGC AGGCCGAGCA GATCGCCTCC
TTCGATGCCG AGGCCATGCG CCGGGGCTCG GTCTCGGCCG AGCAGGAGAT GCCGGGTCCG
CGTGGCGTCC GCCGCTTCCT CGTCTCCCGC CGCCCGGCGG GCGAGCATCT GGTGGTGACC
TTCTTCGAGA TCACCGATCT GCGCGAGACC GAAGGCGTTC TGCGCCAGCG CGAGGCACAT
CTGCGCAATC TGCTCGAGCT GCATCCGGTG GCGCCCTTCA GCTTCACCGC CGACGGGGTG
CTCTCGGATC TCTCCGACCG GCTGGTCGCG ATCACCGGGC TGCCTGCGGG CACGCGGCAT
GTCGATGCCT GGTGGGCCGC GATGCATCCC TGCGACCGGC GCGACCTGCG ACGGGCCTGG
ATCCGCTCCG TCCGGGGGGG GCAGTCCTTC GATGCCGAGC ACCGGCTGCA GATGCCGGAC
GGTGCCTACC GCTGGTTCCG GGCGCGCATC GTGGCCCGGC CGAGGGATCA GGATCAGCGG
GTGGACCGCT GGTTCGGCAT CATCGAGGAT GTGCACGAAA GGCGCACCAC CGTCGAGCAG
CTGCGCGAGA GCGAAGCGCG CTTCCGCGCC TTCGCCGACG ATGCGCCGGT GATGATCTGG
GTGACGGACA CCGAGGGGCG GAACGTCTTC GTCAGCCGCA GCTGGCTCGG TGCCACCGGC
CAGTCGCTGG ACGAGGCTCT GGGGACGGGC TGGATCGATG CCGTTCATCC CGATGACCGC
GATGCCACGG CGGCGATCAC GCGGGAGGCG ATGCGCCGGC GCATCGCCTA CACGAACGAG
TTCCGTATCC GACGGAAGGA TGGCGGGTGG TGCTGGGTCA TCGACGTGGG TCACCCCCGC
CTCCTCGCCG ACGGCACCTT CATCGGCTAT ATCGGCTGCT GCGTCGACAT CAGCGCCCGC
CGTCAGGCCG AGGATGACCG GGTGATGGCG CAGCTCCAGG TCTTTCACAT GGCGCGCCAC
GACATGCTGA CGGGCCTGCC CAACCGGCAT TATTTCGGCG ACTGCTATCA GGAGGCGGTG
GCGAGCCTCG CGCCGGAGCG GTCGGTTGCC GTGCTGATGC TCGATCTCGA CGGGTTCAAG
ACGGTGAACG ACACCCGCGG CCACCCGGTG GGCGATCAGG TGCTGTGCGA AGTCGCCAAC
CGGCTGCGCA CCTCGGTGCG CAGCACCGAC ACGGTGGCGC GGCTGGGCGG GGACGAGTTT
GCCGTGATCC AGACGCCGAT CCGCTCCGAG CAGGAGGCCT GCGATCTGGC CCGCCGCCTG
ATCGCGGCCA TCTCGAAGCC CTTCGATCTC GAGGGTGCGG TGCCCGAAGT GGGCGCCAGC
GTGGGCATCG CCTTTGCCCG CGGGCACGGC GACAGCGCCG AGGAGATCAT GCGCTACGCC
GATGTGGCGC TCTATGCGGC CAAGCAGGCG GGACGCGGCA CCTTCCGTGT CTTCGACGAG
GCGACCGACA CCCATCTTCA GAGCCGGCAG AAGATGAAGG CGGCGCTCCG GGCTGCGCTG
GGTCTGGGCG AACTCTCGGT CTTCTACCAG CCGCTGATCG GGTTGCGCGA CGGGCAGGTC
ACGGCCTGCG AGGCGCTGAT GCGCTGGCAT CGCAAGGGGG CGGGCTGGAT CACGCCCGAC
CAGTTCATCC CGCTTGCGGA AGAGGCGGGG CTCATCGGCG ACATGGGCGA CTGGGTGCTG
CACGAGGCCT GCGCTCAGGC CGCCCGATGG CCGGACAGCG TGTCGGTGGC GGTCAACCTG
TCGCCGCTCC AGTTCCATGG CGGGGCGCTG GTCGATCAGG TGGCCTCGGC GCTGCGCGCC
TCGGGCCTGC CGCCCGAGCG GCTCCAGCTC GAGATCACCG AATCCGTGTT GCTCGACCCC
ACCGACCGGA ACATCGGCGT GCTGCAGGAT CTCCGGGCGC TGGGGGCGAA GATCGTGATG
GACGATTTCG GCACCGGCTA CTCGTCGCTG GGCTATCTGC GCAGCTTCCC CTTCGACAAG
ATCAAGGTGG ATCGCTCCTT CATCCGCGAC CTTCCCGACG CGCGCGAGGC GCTGGCCATC
CTGAAGGCGG TGGCCGGGCT CGGACGCAGC CTCGACATGC GCACCACCGT CGAGGGGGTG
GAGACGCAGG CGCAGCTCGA TTGCGCCATC GCCGAGGGGG TGGACGAGGC GCAGGGCTAT
TTCTTCTCGC GCCCGCTGCC TGCCCCCGGG ATCGCAAGCT TCATCTCCGG CTGCCTGCCC
AAGCGCAGGA TACAGCCGGC GACGGGGGAC GCCGCGACCT GA
 
Protein sequence
MTEMQSLRHR LIRQPGPVSG ECWIAFFDGV AHPVLIKNAQ GQVIFANRAA CDLLGRDRSG 
LAGGAEHELV AGTQAEQIAS FDAEAMRRGS VSAEQEMPGP RGVRRFLVSR RPAGEHLVVT
FFEITDLRET EGVLRQREAH LRNLLELHPV APFSFTADGV LSDLSDRLVA ITGLPAGTRH
VDAWWAAMHP CDRRDLRRAW IRSVRGGQSF DAEHRLQMPD GAYRWFRARI VARPRDQDQR
VDRWFGIIED VHERRTTVEQ LRESEARFRA FADDAPVMIW VTDTEGRNVF VSRSWLGATG
QSLDEALGTG WIDAVHPDDR DATAAITREA MRRRIAYTNE FRIRRKDGGW CWVIDVGHPR
LLADGTFIGY IGCCVDISAR RQAEDDRVMA QLQVFHMARH DMLTGLPNRH YFGDCYQEAV
ASLAPERSVA VLMLDLDGFK TVNDTRGHPV GDQVLCEVAN RLRTSVRSTD TVARLGGDEF
AVIQTPIRSE QEACDLARRL IAAISKPFDL EGAVPEVGAS VGIAFARGHG DSAEEIMRYA
DVALYAAKQA GRGTFRVFDE ATDTHLQSRQ KMKAALRAAL GLGELSVFYQ PLIGLRDGQV
TACEALMRWH RKGAGWITPD QFIPLAEEAG LIGDMGDWVL HEACAQAARW PDSVSVAVNL
SPLQFHGGAL VDQVASALRA SGLPPERLQL EITESVLLDP TDRNIGVLQD LRALGAKIVM
DDFGTGYSSL GYLRSFPFDK IKVDRSFIRD LPDAREALAI LKAVAGLGRS LDMRTTVEGV
ETQAQLDCAI AEGVDEAQGY FFSRPLPAPG IASFISGCLP KRRIQPATGD AAT