Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pfl01_5648 |
Symbol | |
ID | 3717442 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas fluorescens Pf0-1 |
Kingdom | Bacteria |
Replicon accession | NC_007492 |
Strand | - |
Start bp | 6330057 |
End bp | 6331820 |
Gene Length | 1764 bp |
Protein Length | 587 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | |
Product | Sodium/hydrogen exchanger |
Protein accession | YP_351375 |
Protein GI | 77461868 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00653645 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCATGCCA TCAGCTTTAT TCAGGATCTG GCGGTGATCA TGTTGGTCGC AGGTGTGGTG ACCGTGCTGT TCCACCGCTT CAAGCAGCCG GTGGTGCTCG GTTACATCGT CGCCGGCTTC ATCATCGGCC CGCACACACC GCCGTTCGGC CTGATCCACG ACGAAGAAAC CATCAAGACC CTCGCCGAGC TGGGGGTGAT TTTCCTGATG TTCTGCCTGG GCCTGGAGTT CAGCCTGCGC AAGCTGTTCA AGGTCGGCGC CACGGCCTTC ATCGCGGCGT TCCTGGAAAT TGTCCTGATG ATCTGGATCG GCTACGAAAT CGGCCGCTGG TTCGACTGGA ACACCATGGA TTCGCTGTTC CTCGGCGCGA TCCTGGCGAT TTCCTCGACC ACCATCATCG TCAAGGCGCT CAACGACCTG AAGATGAAAA ACGAGCGCTT CGCGCAGCTG ATCTTCGGCG TGCTGATCGT CGAGGATATT CTTGGCATCG GCATCATCGC CTTGCTGTCG AGCATTGCGG TCAGCGGCAC GGTGAGCTCC GGCGAAGTGT TTTCCACGGT CGGCAAGCTC TCGCTGTTCA TGATCGTCGC CCTGGTAGTC GGCATTCTGC TGGTGCCGCG TCTGTTGGCT TACGTCGCCA GGTTCGAAAG CAACGAGATG CTGCTGATCA CCGTGCTGGG CCTGTGTTTC GGTTTCTGCC TGCTGGTGGT CAAACTCGAG TACAGCATGG TGCTCGGGGC GTTCCTGATC GGCGCGATCA TGGCCGAGTC GCGGCAACTG CTGAAAATCG AGCGCCTGAT CGAGCCGGTT CGCGACCTGT TCAGTGCGAT CTTCTTCGTC GCCATCGGCC TGATGCTCGA TCCGATGATC CTTCTGCAAT ACGCGTGGCC AATTGCGGTA ATCACTGTCG CCGTGGTGCT GGGCAAGATG CTGTCCTGCG GCCTCGGTGC CTTTATCGCC GGTAATGACG GACGCACCTC ACTGCGGGTC GGGATGGGGC TTTCGCAGAT TGGTGAATTC TCCTTCATCA TCGCGGCGCT GGGGATGACC CTGCAGGTCA CCAGCAACTT CCTGTATCCG GTGGCCGTGG CGGTTTCGGT GATTACCACG TTGCTGACGC CGTACCTGAT CCGGGCTGCC GATCCGCTGT CGATCAAGCT GTCAGCCGCG ATGCCGCAGC GCCTCGGTCG AGTGTTCGGA ATGTACGGCG AATGGCTGCG TAGCATTCAG CCGCAGGGTG AGGGCGCGAT GCTGGCGTCG ATGATCCGGC GGATCCTGCT GCAGGTCGGG GTCAATCTGG CGCTGGTGAT CGCGATCTTC TTTGCCGGCG CTTTCTTTGC CGGGCGCCTC TCGATCTGGA TGCAGGAATG GATCAGCGAC CCAAGCTGGC AGAAGGCGTT GATCTGGGGC GGGGCGTTGC TGGTGTCGTT GCCGTTCCTG ATCGCGGCCT ATCGCAAGCT CAAGGCGCTG TCGATGTTGC TGGCGGAGAT GGGTGTGAAG CCGGAAATGG CCGGGCGTCA CACACAGCGA GTGCGCCGAG TGATCGCCGA AGTGATCCCG ATCATCTCGC TGCTGGTGAT TTTCCTGCTG TTGGCAGCCT TGTCGGCCAG TATCTTGCCG ACCAACAAGT TGCTGGTGCT GATCGCCGTG GTCGCGGCCG CCGTGGCGGC GCTGCTCTGG CGCTGGTTCA TCCGGGTGCA CACGCGGATG CAGGTGGCCC TGCTGGAAAC CCTCGACAAC CACAAGGAGT CGTCGGGGCA CTGA
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Protein sequence | MHAISFIQDL AVIMLVAGVV TVLFHRFKQP VVLGYIVAGF IIGPHTPPFG LIHDEETIKT LAELGVIFLM FCLGLEFSLR KLFKVGATAF IAAFLEIVLM IWIGYEIGRW FDWNTMDSLF LGAILAISST TIIVKALNDL KMKNERFAQL IFGVLIVEDI LGIGIIALLS SIAVSGTVSS GEVFSTVGKL SLFMIVALVV GILLVPRLLA YVARFESNEM LLITVLGLCF GFCLLVVKLE YSMVLGAFLI GAIMAESRQL LKIERLIEPV RDLFSAIFFV AIGLMLDPMI LLQYAWPIAV ITVAVVLGKM LSCGLGAFIA GNDGRTSLRV GMGLSQIGEF SFIIAALGMT LQVTSNFLYP VAVAVSVITT LLTPYLIRAA DPLSIKLSAA MPQRLGRVFG MYGEWLRSIQ PQGEGAMLAS MIRRILLQVG VNLALVIAIF FAGAFFAGRL SIWMQEWISD PSWQKALIWG GALLVSLPFL IAAYRKLKAL SMLLAEMGVK PEMAGRHTQR VRRVIAEVIP IISLLVIFLL LAALSASILP TNKLLVLIAV VAAAVAALLW RWFIRVHTRM QVALLETLDN HKESSGH
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