Gene Pfl01_5597 details

Gene Information

• Locus tag: Pfl01_5597
• ID: 3713513
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas fluorescens Pf0-1
• Kingdom: Bacteria
• Replicon accession: NC_007492
• Strand: +
• Start bp: 6269283
• End bp: 6272639
• Gene Length: 3357 bp
• Protein Length: 1118 aa
• Translation table: 11
• GC content: 58%
• Product: Rhs element Vgr protein
• Protein accession: YP_351325
• Protein GI: 77461818

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 12
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCTGGAG CTGTCAGTTC TGCGCACTTC ACTCTGCAGA TTTCTGCTGT TCGCAATGAC 
TTCAAGGTGC TGGCCTTCGA GGGCACCGAG ACCGTCAGCA CCCTTTATGC CATTCACGTC 
GAACTGGTCA GTGAAGATCC CGACTTCGAT ATGGAAGGCC TGCTCGGTCA GACTGCCTTC 
CTGCAGTTCG GCCTGAACGA TGAAGGCATT CATGGATGCA TCGACGATGT GTTGGCGGGT 
GAATCCGACA AACGCCTGAC CCGCTATCGC CTGACACTGG TGCCGAGCCT CCACTATTTG 
CAGTTCAGTC ACGATCAACG GATTTACCAG AGTCAGACCG TCCCGCAGAT CATCACGCAA 
ACGCTCAAGC GACACGGCAT CCTCGTCGAT GCGTTCACTT TTCATGTCCA GCCCCTCGTG 
GCACGGGAGT ACTGCACCCA ATACGGCGAA AGCGATTTCG AGTTCATCCA GCGCCTGTGT 
GCCGAGGAGG GAATCGCCTG GCATCATCAG CACTCGGCGC AAGGCCATTT GCTGGTGTTC 
ACCGATGATG CGGTTTTCCT CCCGACATTG CGTCCCACGC CCTTCCGGCG GGAAAACGGG 
ATGGTCCCGG AATATCCGGT GGTCAGCAGC TTTTCCTTGC GCGCCGCCAC TCGGACAAGC 
CGGGTCACCC GGCGTGGTTA CGACCTGAAG CGACCGACGC TTTTACTCGA AAGCCGCTTC 
AGCGCCGGAT TCACACCGAC GCTTGAGGAC TACCGATACC CGCTGCTGCT GGACAACGAA 
AAGCGCGGCA AGCATCTGGC CCGTCAGGCC CTGGAACGCC ATCGCGCCGA TTATGAAATA 
GCCGAGGGTC AAAGCAACCA GACGACCCTG CGCTGTGGCC ATCTGCTTGA ACTGACCGAA 
CACCCTCGTC AGAACTACAA CGGTCTGTGG CTGCTGCTCG GTGTCACCCA CACCGGACGG 
CAGCCGCAAG TTCTGGAGGA GTCGGCCAGC AGCGAAACTC AATCGGCGGA CGGCTTTACC 
CAAGGCTATC GCAACACCTT CTGCGCCATT CCTGCCGAAG TAGTGTTCCG CCCGCCACTG 
CCCGCACGCC GGCCCCCGCT GGTCAGCCAG ACCGCCAGGG TGACAGGCCC CAAAGGCGAA 
GAGATCTACT GCGATGAGTT CGGTCGGGTA AAAGTCGAAT TCCACTGGGA CCGAGCCGAA 
TTAAACAGTG AGCGCAGCAG TTGCTGGGTG CGGGTCTCGT CGAGCTGGGC CGGGAACGGT 
TTCGGTGTCG TCACCCTCCC CCGCATCGGG ATGGAAGTGG TGGTGACCTT CGTGGAAGGT 
GATCCCGACA AGCCGCTGAT TACCGGCTGC GTGATCAACA AGGTCACCCC TGCACCCTAC 
AAACTTCCCG AGCACAAGAC CCGAACCGTG TTGCGCAGTC GCAGCTCGCC TGACACCGGC 
GGCTACAGCG AATTGATGAT TGAAGACCGC GCCGGACTGG AACTGGTCTA CCTGCGTGCC 
CAGCGCGACA TGGAGCGGCA GGTTCTCCAT GACAGCCGGC TGGCGGTCGG GCGCGATCGA 
TGGGAAAGCA TTCAGGGCAG CAGCCAGACG ACGGCCGGGA AAATCATTAC CGTCGAGGCG 
GGCCAGCAGG TGCAGATCAA GGCCGGTGCC AGCGTGGTGC TGGATGCAGG CGCCAGCATC 
ACGCTGAAGG CGGGCGGTCA CCATATCGTG ATCGACAGGG GCGGGATCTT CAGCAGTACC 
GAGATCGTGG CGGGAGGAAA GACGTCCGCC AGCGGAGCCG CTGATCATCC AGAAGCCGCA 
ATGGCGGGAG CCTTGGCGGC CGGACTGACG GCCTCATCCA CTCAAGACCC GGAAGACGCC 
GAACTCGAAG AAGAGGAGGA AGAGGTCGAA CTGGAAGACG AGTTACCTGC TGGCATCACC 
TTGCGGATCG GCGTGTTTTT CGATGGGACG GGGAACAACA AGGCCAACAG CGAAACGGTC 
GCGGCTTGCT ATGCGCCAGA TGCCAATCTG GCGGAGGCAG CCGAAGAGAT TCAGAAGCAC 
TGCGCCGCTT ATGGCTATGA CGGAAATGGC AACTCGCCGG ATAACAGCTA CGGCAATGAT 
GTAAGCAATA TCGTGCGGTT GCATGAGCTG TATACAGACC ATGCCTTTGA CGTATTACCA 
GAGAACACGA AACAGGCTTC TTTGCGCGTA TACATCGAAG GCATCGGTAC AACCGCTGAC 
GTAGACGACT CACTTTACGC ACAGGCAACC GGCCGAGGCG AAACGGGTGT TCTGGCTCGT 
GTGGAGCAGA GCCCTGAAAA AATCATGGAG CAAATTCGGT CACTGATTGA TAGCAACCCC 
AACACGCTAA TAGAAAGAAT CGAATTCGAT ATTTTCGGTT TCAGTCGAGG CGCCGCCGCT 
GCACGGCACT TCGCAAACGA GGTGCTAAAA GGCAAGCGCA GCATTCTCGC AAAGGCGTTG 
CCAGCAGGCT CTCCGTTCTT GGTCAGTAGC TTTGACTGGG TTTCACAATC CAGTATCAGC 
ATCAATTTCA TTGGTCTGTT TGATACCGTC GCGGCAATCG CCAATCCATG GTTGCTCGAC 
TTCACTGGCG CCAACAGCAG AAATCCGGGA CTGAACTTGA AGCTGCCGGA GGGTTGCGCC 
AACAAAGTGG TGCACCTGGT GGCGCGTGAT GAACATCGCG AGAACTTTGC CCTTAATAGC 
CTGGGTGAGA TTGATCTGGT ATTACCCGGC GCCCACTCGG ATCTGGGAGG TGGCTATCTG 
CCCAGGGCCA GGGAGAAACT TCTGTTGAGC AGTCCGATCA CCAGCACCAT CAGCCAAAGC 
AAGGAAGCGA CCCGTAGCGC AGCCTATGTC TCTGCCGAAA AGGAGGCGTT TGCCTGGTAT 
ACGAAAGGCG TCATCGAAGA TGACGCTCCA GGCAATCAAC TGCGGGTTGC ACTCTGGGAA 
GCCCCTGTCA TTCAACGATT GGAAAGGGGC AGATCCACAC CGGAGCCCCA GAAGCGGGTT 
TATGCTGCGG CCATGATTGA ACGCCCGGTA CACGGTGAGT TGTCGCTGGT GTATTTACGC 
ATCATGCGTG AGCTGGCGGT AAGAGCCGGG GTGCCGCTCA AGCTGATTCC CGACAGGTCA 
GCGCTAAATT TGCCCGCAGA GTTAGTACCC ATTCACAAAA AACTTCAGGC TTACGCCTTG 
GGTGAGTCAT CTGTTGAAGG GCTGACTATC AAAGAACGGG CTTTGTTACG CAGTCGCTAT 
ATCCACCTAT CTGCGCACTG GAACGCAGCC AAAGATTTCA ACAACAGCGA CTGGAGCGTT 
GTTTTTATCA ACCGCCCAAC AAAGAACAAA CAACGAGTGG TGCACCCCCA TGAATAA 

 

Protein sequence

MPGAVSSAHF TLQISAVRND FKVLAFEGTE TVSTLYAIHV ELVSEDPDFD MEGLLGQTAF 
LQFGLNDEGI HGCIDDVLAG ESDKRLTRYR LTLVPSLHYL QFSHDQRIYQ SQTVPQIITQ 
TLKRHGILVD AFTFHVQPLV AREYCTQYGE SDFEFIQRLC AEEGIAWHHQ HSAQGHLLVF 
TDDAVFLPTL RPTPFRRENG MVPEYPVVSS FSLRAATRTS RVTRRGYDLK RPTLLLESRF 
SAGFTPTLED YRYPLLLDNE KRGKHLARQA LERHRADYEI AEGQSNQTTL RCGHLLELTE 
HPRQNYNGLW LLLGVTHTGR QPQVLEESAS SETQSADGFT QGYRNTFCAI PAEVVFRPPL 
PARRPPLVSQ TARVTGPKGE EIYCDEFGRV KVEFHWDRAE LNSERSSCWV RVSSSWAGNG 
FGVVTLPRIG MEVVVTFVEG DPDKPLITGC VINKVTPAPY KLPEHKTRTV LRSRSSPDTG 
GYSELMIEDR AGLELVYLRA QRDMERQVLH DSRLAVGRDR WESIQGSSQT TAGKIITVEA 
GQQVQIKAGA SVVLDAGASI TLKAGGHHIV IDRGGIFSST EIVAGGKTSA SGAADHPEAA 
MAGALAAGLT ASSTQDPEDA ELEEEEEEVE LEDELPAGIT LRIGVFFDGT GNNKANSETV 
AACYAPDANL AEAAEEIQKH CAAYGYDGNG NSPDNSYGND VSNIVRLHEL YTDHAFDVLP 
ENTKQASLRV YIEGIGTTAD VDDSLYAQAT GRGETGVLAR VEQSPEKIME QIRSLIDSNP 
NTLIERIEFD IFGFSRGAAA ARHFANEVLK GKRSILAKAL PAGSPFLVSS FDWVSQSSIS 
INFIGLFDTV AAIANPWLLD FTGANSRNPG LNLKLPEGCA NKVVHLVARD EHRENFALNS 
LGEIDLVLPG AHSDLGGGYL PRAREKLLLS SPITSTISQS KEATRSAAYV SAEKEAFAWY 
TKGVIEDDAP GNQLRVALWE APVIQRLERG RSTPEPQKRV YAAAMIERPV HGELSLVYLR 
IMRELAVRAG VPLKLIPDRS ALNLPAELVP IHKKLQAYAL GESSVEGLTI KERALLRSRY 
IHLSAHWNAA KDFNNSDWSV VFINRPTKNK QRVVHPHE