| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_5498 |
|---|
| Symbol | |
|---|
| ID | 3713822 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | + |
|---|
| Start bp | 6164471 |
|---|
| End bp | 6165718 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | |
|---|
| Product | diaminopimelate decarboxylase |
|---|
| Protein accession | YP_351226 |
|---|
| Protein GI | 77461719 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGCTT TTAACTACCG TGGCGGGGAA CTGTTCGCGG AAGGTGTGGC GCTGTCCGCC
ATCGCCGATC GCTTCGGCAC TCCCACCTAC GTTTACTCCC GCGCGCACAT CGAGGCCCAG
TACCTGGCCT ACGCCGATGC GCTGGCCGGC ATGCCGCACC TGGTGTGCTT TGCGGTCAAG
GCCAACTCCA ACCTCGGCGT CCTGAATGTC CTGGCCCGTA TCGGCGCCGG TTTCGACATC
GTTTCCCGCG GCGAGCTGGA ACGCGTTCTG GCCGCCGGCG GCAGCCCGGA CAAGATCGTG
TTCTCCGGCG TCGGCAAGAC CCGTGACGAC ATGCGCCGTG CGCTGGAAGT CGGCGTGCAT
TGCTTCAACG TCGAATCCAC TGACGAGCTC GAGCGCCTGC AAGTGGTCGC CGCCGAGCTG
GGCGTTCGCG CGCCGATTTC GCTGCGCGTG AACCCGGACG TCGATGCCGG CACCCACCCG
TACATTTCCA CCGGTCTCAA AGAGAACAAG TTCGGCATCG CCATCGCCGA CGCCGAAGAC
GTGTACGTGC GTGCCGCGCA CCTGCCGAAC CTGGAAGTGG TCGGCGTCGA CTGCCACATC
GGTTCGCAAC TGACCACTCT GCCTCCGTTC CTCGATGCCC TCGACCGCCT GCTGGATCTG
GTCGATCGCC TCGGCGATTG CGGCATCCAC CTGCGCCACA TCGATCTCGG TGGCGGCCTG
GGTGTGCGTT ATCGCGATGA AGAGCCGCCA TTGGCCGCCG ATTACATCAA GGCTGTGCGC
GAGCGTCTGG TCGGCCGTGA TCTGGCGCTG GTGTTCGAAC CGGGCCGCTT CATCGTCGCC
AACGCCGGCG TGCTGCTGAC CCAGGTCGAG TACCTCAAGC ACACCGAACA CAAAGACTTC
GCCATCGTCG ACGCGGCCAT GAACGACCTG ATCCGCCCGG CGCTGTACCA GGCCTGGATG
GACGTGACCC CGGTCAAGCC ACGCGAGACC GCTGCGCGTA CCTACGACGT CGTCGGCCCG
ATCTGCGAAA CCGGCGACTT CCTCGCCAAG GAACGCGAAC TGGCGCTGGA AGAAGGCGAT
CTGCTGGCCG TGCATTCGGC CGGTGCCTAC GGTTTCGTGA TGAGCTCCAA CTACAACACC
CGCGGCCGCG CCGCCGAAGT GCTGGTGGAT GGCGATCAGG CCTTTGAAGT GCGTCGCCGC
GAAACCGTGG CCGAGCTGTT TGCCGGCGAA AGCCTGCTGC CGGAGTGA
|
|---|
| Protein sequence | MDAFNYRGGE LFAEGVALSA IADRFGTPTY VYSRAHIEAQ YLAYADALAG MPHLVCFAVK
ANSNLGVLNV LARIGAGFDI VSRGELERVL AAGGSPDKIV FSGVGKTRDD MRRALEVGVH
CFNVESTDEL ERLQVVAAEL GVRAPISLRV NPDVDAGTHP YISTGLKENK FGIAIADAED
VYVRAAHLPN LEVVGVDCHI GSQLTTLPPF LDALDRLLDL VDRLGDCGIH LRHIDLGGGL
GVRYRDEEPP LAADYIKAVR ERLVGRDLAL VFEPGRFIVA NAGVLLTQVE YLKHTEHKDF
AIVDAAMNDL IRPALYQAWM DVTPVKPRET AARTYDVVGP ICETGDFLAK ERELALEEGD
LLAVHSAGAY GFVMSSNYNT RGRAAEVLVD GDQAFEVRRR ETVAELFAGE SLLPE
|
|---|
| |