Gene Pfl01_5417 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPfl01_5417 
Symbol 
ID3714439 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas fluorescens Pf0-1 
KingdomBacteria 
Replicon accessionNC_007492 
Strand
Start bp6081120 
End bp6082463 
Gene Length1344 bp 
Protein Length447 aa 
Translation table11 
GC content59% 
IMG OID 
Productouter membrane porin 
Protein accessionYP_351145 
Protein GI77461638 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.0532754 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0252012 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACAAGT CCACCTTGGC CCTGGCCGTG GCCGTAGGGG TTTTGGCGCA GCAGGCAGGC 
GCCGCCGGTT TCATCGAAGA CAGCAAGGCC ACCTTGGGGC TGCGTAACTT CTACATCAAC
ACCGACAACC GCGATGGCGC TGGCGCCAAC AAGAACGAAG AGTGGGGCCA AGGCTTCGAT
CTGCGTTTCA TCTCCGGTTA CACCCAAGGC ACTGTGGGCT TCGGTATCGA CGCCATCGGC
TTGCTGGGCG TGCGTCTGGA TTCGGGCGGC GGCACCAACG GCAACAGCGG CACCGCTTAC
GGCGGCACTG TGTTCCCGAG CGAGTCCAAC GGCAAAGCAG TGGACAACTT CTCCAGCCTG
GGTCTGACTG CCAAAGCCAA GATCTCCCAG ACCGAACTGA AGCTGGGCAC CCTGCAGCCG
AAGAACCCGG TCATCGTGAC CAACGACGGC CGCCTGCTGC CACAAACCTG GCAGGGTGGT
CAGATCACCT CCGGCGAAAT CAAGGACCTG ACTCTGGTCG GTGGTCAGAT CGAAGCCGTG
AAAGGCCGTA ACTCCAGCAA CAACGAAAAC CTGTCCATCA GCGGCGCAAA CAGCCGTGGC
ACTGGCTTCC GTGACAGCAA CAAGTTCATC TACGCCGGTG GTGACTACAA GATCACCAAA
GACCTGACTG CCCAGTACTA CTACGGCAAC CTGGAAGACT TCTACAAGCA GCACTTCCTG
GGTCTGGTAC ACAACTGGGC CATCGGCCCG GGCGTATTGA AGTCTGACTT CCGTTACTTC
AACAGCTCCG ACGACGGCAA GAACGGCACT GATCCTGCGT ACTTCAGCAC CGGTAACTAC
ACCGGCGTGC GTAACGGTCG TGGCGAAGTC GACAACAACC TGTACAGCGG CCTGTTCCTG
TACACCGTTG AAGGTCACAC CTTCGGTGGC GGTTACCAGG TTTCCAACGG CAGCTCTGAC
TTCCCTTGGC TGAACCAGGG CGACGGTTCG TCGAACTACA CCATCACCGA CATGCAGATC
CAGAAGTTCG GCCGTGCCGG CGAGAAAACC TGGCAGGCTC GCTACTCGTA TGACTTCGCT
AAAGTCGGCG TACCTGGCCT GACCGCTGGT GTGGTTTACC TGAAAGGCGA TTCGATCGAC
ACCGTTGGTA CCAACGGTCG CGAAAGCGCT TCGAACCGTT CCGAGTGGGA ACGCGACTTC
ACCATCGGTT ACGTCGTACC GGAAGGTCCT TTCAAGAACG TCGGCCTGAT GTGGAAAAAC
GCTGTATGGC GCACCGACCT GCCGAACACC CGTTCGCAGG ACGAAAACCG CCTGATCGTC
AGCTACTCGA TCCCGCTGTT GTAA
 
Protein sequence
MNKSTLALAV AVGVLAQQAG AAGFIEDSKA TLGLRNFYIN TDNRDGAGAN KNEEWGQGFD 
LRFISGYTQG TVGFGIDAIG LLGVRLDSGG GTNGNSGTAY GGTVFPSESN GKAVDNFSSL
GLTAKAKISQ TELKLGTLQP KNPVIVTNDG RLLPQTWQGG QITSGEIKDL TLVGGQIEAV
KGRNSSNNEN LSISGANSRG TGFRDSNKFI YAGGDYKITK DLTAQYYYGN LEDFYKQHFL
GLVHNWAIGP GVLKSDFRYF NSSDDGKNGT DPAYFSTGNY TGVRNGRGEV DNNLYSGLFL
YTVEGHTFGG GYQVSNGSSD FPWLNQGDGS SNYTITDMQI QKFGRAGEKT WQARYSYDFA
KVGVPGLTAG VVYLKGDSID TVGTNGRESA SNRSEWERDF TIGYVVPEGP FKNVGLMWKN
AVWRTDLPNT RSQDENRLIV SYSIPLL