Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pfl01_5417 |
Symbol | |
ID | 3714439 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas fluorescens Pf0-1 |
Kingdom | Bacteria |
Replicon accession | NC_007492 |
Strand | - |
Start bp | 6081120 |
End bp | 6082463 |
Gene Length | 1344 bp |
Protein Length | 447 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | |
Product | outer membrane porin |
Protein accession | YP_351145 |
Protein GI | 77461638 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.0532754 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.0252012 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACAAGT CCACCTTGGC CCTGGCCGTG GCCGTAGGGG TTTTGGCGCA GCAGGCAGGC GCCGCCGGTT TCATCGAAGA CAGCAAGGCC ACCTTGGGGC TGCGTAACTT CTACATCAAC ACCGACAACC GCGATGGCGC TGGCGCCAAC AAGAACGAAG AGTGGGGCCA AGGCTTCGAT CTGCGTTTCA TCTCCGGTTA CACCCAAGGC ACTGTGGGCT TCGGTATCGA CGCCATCGGC TTGCTGGGCG TGCGTCTGGA TTCGGGCGGC GGCACCAACG GCAACAGCGG CACCGCTTAC GGCGGCACTG TGTTCCCGAG CGAGTCCAAC GGCAAAGCAG TGGACAACTT CTCCAGCCTG GGTCTGACTG CCAAAGCCAA GATCTCCCAG ACCGAACTGA AGCTGGGCAC CCTGCAGCCG AAGAACCCGG TCATCGTGAC CAACGACGGC CGCCTGCTGC CACAAACCTG GCAGGGTGGT CAGATCACCT CCGGCGAAAT CAAGGACCTG ACTCTGGTCG GTGGTCAGAT CGAAGCCGTG AAAGGCCGTA ACTCCAGCAA CAACGAAAAC CTGTCCATCA GCGGCGCAAA CAGCCGTGGC ACTGGCTTCC GTGACAGCAA CAAGTTCATC TACGCCGGTG GTGACTACAA GATCACCAAA GACCTGACTG CCCAGTACTA CTACGGCAAC CTGGAAGACT TCTACAAGCA GCACTTCCTG GGTCTGGTAC ACAACTGGGC CATCGGCCCG GGCGTATTGA AGTCTGACTT CCGTTACTTC AACAGCTCCG ACGACGGCAA GAACGGCACT GATCCTGCGT ACTTCAGCAC CGGTAACTAC ACCGGCGTGC GTAACGGTCG TGGCGAAGTC GACAACAACC TGTACAGCGG CCTGTTCCTG TACACCGTTG AAGGTCACAC CTTCGGTGGC GGTTACCAGG TTTCCAACGG CAGCTCTGAC TTCCCTTGGC TGAACCAGGG CGACGGTTCG TCGAACTACA CCATCACCGA CATGCAGATC CAGAAGTTCG GCCGTGCCGG CGAGAAAACC TGGCAGGCTC GCTACTCGTA TGACTTCGCT AAAGTCGGCG TACCTGGCCT GACCGCTGGT GTGGTTTACC TGAAAGGCGA TTCGATCGAC ACCGTTGGTA CCAACGGTCG CGAAAGCGCT TCGAACCGTT CCGAGTGGGA ACGCGACTTC ACCATCGGTT ACGTCGTACC GGAAGGTCCT TTCAAGAACG TCGGCCTGAT GTGGAAAAAC GCTGTATGGC GCACCGACCT GCCGAACACC CGTTCGCAGG ACGAAAACCG CCTGATCGTC AGCTACTCGA TCCCGCTGTT GTAA
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Protein sequence | MNKSTLALAV AVGVLAQQAG AAGFIEDSKA TLGLRNFYIN TDNRDGAGAN KNEEWGQGFD LRFISGYTQG TVGFGIDAIG LLGVRLDSGG GTNGNSGTAY GGTVFPSESN GKAVDNFSSL GLTAKAKISQ TELKLGTLQP KNPVIVTNDG RLLPQTWQGG QITSGEIKDL TLVGGQIEAV KGRNSSNNEN LSISGANSRG TGFRDSNKFI YAGGDYKITK DLTAQYYYGN LEDFYKQHFL GLVHNWAIGP GVLKSDFRYF NSSDDGKNGT DPAYFSTGNY TGVRNGRGEV DNNLYSGLFL YTVEGHTFGG GYQVSNGSSD FPWLNQGDGS SNYTITDMQI QKFGRAGEKT WQARYSYDFA KVGVPGLTAG VVYLKGDSID TVGTNGRESA SNRSEWERDF TIGYVVPEGP FKNVGLMWKN AVWRTDLPNT RSQDENRLIV SYSIPLL
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