| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_5270 |
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| Symbol | ligB |
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| ID | 3715338 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas fluorescens Pf0-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007492 |
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| Strand | + |
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| Start bp | 5931067 |
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| End bp | 5932743 |
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| Gene Length | 1677 bp |
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| Protein Length | 558 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | |
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| Product | NAD-dependent DNA ligase LigB |
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| Protein accession | YP_350998 |
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| Protein GI | 77461491 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.27312 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTGCCA CACTGCGCCT GTTTTTGTTT TTCCTGCCGT TTTTCCACCT CCACACCTTC
GCTGACGACT GCCCCGACTG GGCCGCCGCC CGGGCATCGA GCGAAGTCGT CGCCCTGCAA
CAACAGATCG ATCGCTGGGA CGACGCCTAT CATCGCGAAG GCCGCTCGGT GATCGCCGAT
GAGCTCTACG ATCAGTCCCG CCTGCGCCTG AACCAATGGC GCCAGTGCTT CAATCTTCCT
TCTCCGCCCG AGCCGTTGCG CACCGCATCA GGCCCGGTTG CGCACCCGGT CGCTCACACC
GGTCTGGACA AGCTTCACGA CGCGGCGGAC ATCGCCACCT GGCTGCGCGA CCGCCAAAAC
GTATGGGTGC AACCCAAGGT CGATGGCGTG GCGGTGACCC TGATCTATCG CGACGGCCGA
TTGCATCAGG CGATCAGTCG CGGGGATGGT GTTCGCGGGC AGGACTGGAC GGCATCTGCA
AAAAAGATCG GAGCCATTCC GCAACAGCTG ACGCAACCGC AGGATCTGCT GGTGCAAGGC
GAACTCTACT GGCGCCTGAA CGGACACATG CAGGCACGTG CCGGCAGCGC CAACGCCCGC
GCCACCGTGG CCGGCCTGCT GGGACGCAAG GATCTCGGCG CGGAACACGC CGCCGGTATC
GGGCTGTTTG TCTGGGACTG GCCGCACGGG CCGAGGGACT TGCCGGAGCG AATCACGGCC
CTGACACAAT TCGGTTTTCC TACCACGGTG CCCTACACCC AGGCCGTCGC CAGCCTGAAC
GACGCGCAAC ACTGGCGCGA TCACTGGTAT CACTCGCCAC TGCCATTCGC CACGGACGGC
GTGGTTCTGC GCCAGAGCCT GCGACCGCCC GCCGAGCGCT GGCAGGCTCG TCCGCCCTAC
TGGGCTGTCG CCTGGAAATA CCCGTTCGCC CAGGCACTGG CCGATGTGCG CAAGGTGCAC
TTCAAGATCG GCCGCACCGG GCGCATTACG CCGGTGCTTG AACTGTCGCC GGTGATGCTC
GATGACCGGC AGATCAAACG GGTCAGCGTC AGTTCGCTCA GGCGTTGGCA GGAGCTGGAC
ATTCGCCCCG GCGATCAGGT CGCAATCAGC CTGGCCGGGC TGACGATTCC GCGCCTCGAC
AGCGTGGTAC TGCGCAGTAC CGAACGCGCC GATCTGAACG TTCCGCTTGC CAGCGATTTT
CACGCCCTGA GCTGCTGGCA ACCGACACCG GGCTGCGAGA GTCAGTTCCT CGCGCGCCTG
ACCTGGCTCA GCGGCAAGCA GGGACTGGCC CTGCCGCATG TCGGTCGCGG CACCTGGGAG
AAACTTCTCG AAACAGGCCG CCTGAACAGC CTGCTGGATT GGTTGACCCT CGACGGGCCG
GAGCTTGCTA ACATTGCCGG TCTCGGCGAG CGTAGCAGTG CCCGCCTGCT GCACAGTTTT
CACAGCGCCC GCCAACGGCC GTTCGCACAA TGGCTCAAAG CCCTGGGGTT GCCACCGACC
GGTCAGGCAA CACTCGCCGA TTCATGGCAG GCGCTGGCAC AACGCAACAC CGAACAATGG
CAGGCAGAAG CCGGGATAGG CCCGGGTCGC GCGGCGCAAT TGAGCGCCTT TTTTCGCGAC
CCGCAGGTAC TGACCCTGAG TGAAACCCTG CAAGCCGCCG GCGTCGACGG CTTCTGA
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| Protein sequence | MLATLRLFLF FLPFFHLHTF ADDCPDWAAA RASSEVVALQ QQIDRWDDAY HREGRSVIAD
ELYDQSRLRL NQWRQCFNLP SPPEPLRTAS GPVAHPVAHT GLDKLHDAAD IATWLRDRQN
VWVQPKVDGV AVTLIYRDGR LHQAISRGDG VRGQDWTASA KKIGAIPQQL TQPQDLLVQG
ELYWRLNGHM QARAGSANAR ATVAGLLGRK DLGAEHAAGI GLFVWDWPHG PRDLPERITA
LTQFGFPTTV PYTQAVASLN DAQHWRDHWY HSPLPFATDG VVLRQSLRPP AERWQARPPY
WAVAWKYPFA QALADVRKVH FKIGRTGRIT PVLELSPVML DDRQIKRVSV SSLRRWQELD
IRPGDQVAIS LAGLTIPRLD SVVLRSTERA DLNVPLASDF HALSCWQPTP GCESQFLARL
TWLSGKQGLA LPHVGRGTWE KLLETGRLNS LLDWLTLDGP ELANIAGLGE RSSARLLHSF
HSARQRPFAQ WLKALGLPPT GQATLADSWQ ALAQRNTEQW QAEAGIGPGR AAQLSAFFRD
PQVLTLSETL QAAGVDGF
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