| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_5232 |
|---|
| Symbol | |
|---|
| ID | 3716183 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | + |
|---|
| Start bp | 5887352 |
|---|
| End bp | 5888317 |
|---|
| Gene Length | 966 bp |
|---|
| Protein Length | 321 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | |
|---|
| Product | 3-hydroxybutyryl-CoA dehydrogenase |
|---|
| Protein accession | YP_350960 |
|---|
| Protein GI | 77461453 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0246648 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTTA TCACCGAAAT CAAAACCTTC GCAGCACTCG GCAGCGGCGT CATCGGCAGC
GGCTGGGTCG CCCGCGCCCT CGCCCACGGC CTCGACGTGG TGGCCTGGGA CCCGGCGCCG
GGCGCTGAAG CGGCGCTGCG CAAACGCGTG GCCAATGCCT GGGGCGCGCT GGAGAAAAAC
GGTCTGGCGC CGGGCGCTTC GCAGGATCGC CTGCGCTTTG TCGCAACCAT TGAAGAGTGC
GTGCGCGATG CGGATTTCAT TCAGGAAAGT GCCCCGGAAC GCCTCGAACT GAAACTGGAC
CTGCACAGCA AGATCAGCGC GGCGGCCAAG CCGAATGCCC TGATCGGGTC CAGCACCTCG
GGTCTGTTGC CAAGCGAGTT CTACGAGAGT TCGACTCACC CGGAACGTTG CGTGGTCGGT
CACCCGTTCA ACCCGGTTTA CCTGCTGCCA TTGGTGGAAG TGGTCGGCGG CAAGAACACC
GCGCCCGAAG CCGTGCAGGC CGCGATGAAA GTCTACGAAT CCCTCGGCAT GCGCCCGCTG
CATGTGCGCA AGGAAGTGCC GGGCTTCATC GCCGACCGCC TGCTCGAAGC GCTGTGGCGC
GAGGCGCTGC ACCTGGTCAA CGACGGGGTG GCGACCACCG GTGAAATCGA TGATGCGATC
CGCTTTGGCG CGGGGCTGCG CTGGTCGTTC ATGGGTACGT TCCTGACTTA CACCCTGGCC
GGTGGCGATG CCGGTATGCG CCACTTCATG TCGCAGTTCG GCCCGGCGTT GCAGTTGCCG
TGGACATACC TGCCGGCACC GGAACTGACC GACAAGTTGA TCGACGATGT GGTGGACGGC
ACCAGCGATC AACTGGGCCG GCACAGTATT TCGGCGCTGG AACGCTATCG TGATGATTGC
CTGCTGGCGG TGCTTGAGGC GGTGAAGACC ACCAAAGAAA AGCACGGGAT GAGTTTCAGC
GAGTAA
|
|---|
| Protein sequence | MSFITEIKTF AALGSGVIGS GWVARALAHG LDVVAWDPAP GAEAALRKRV ANAWGALEKN
GLAPGASQDR LRFVATIEEC VRDADFIQES APERLELKLD LHSKISAAAK PNALIGSSTS
GLLPSEFYES STHPERCVVG HPFNPVYLLP LVEVVGGKNT APEAVQAAMK VYESLGMRPL
HVRKEVPGFI ADRLLEALWR EALHLVNDGV ATTGEIDDAI RFGAGLRWSF MGTFLTYTLA
GGDAGMRHFM SQFGPALQLP WTYLPAPELT DKLIDDVVDG TSDQLGRHSI SALERYRDDC
LLAVLEAVKT TKEKHGMSFS E
|
|---|
| |