Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pfl01_5150 |
Symbol | |
ID | 3717281 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas fluorescens Pf0-1 |
Kingdom | Bacteria |
Replicon accession | NC_007492 |
Strand | + |
Start bp | 5787803 |
End bp | 5791549 |
Gene Length | 3747 bp |
Protein Length | 1248 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_350878 |
Protein GI | 77461371 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCAGAC TGGCGTCCGT GCTTTTTTTG CTGCCACTGA TGATCTGGAC CGCAACGGCT GACGCGCTGA CTCTGAACGA TGAAGAACGT AGCTGGCTGG CGGCTCACCC GGATTTGCGC CTGGGTGTCG ATGCGTCGTG GCCACCCTTC GAGTTCCGCG ACGATCAGAG CCGCTATCAG GGCCTGGCTG CGGACTATAT CGATGTGATT CGCCAACGCC TGGCGATCAA ACTCACGCCC ATCGAGCCGG TGAGCTGGAC GGTAGTGCTC GAACAGGCGA AAAACGGCAC GATCGACCTG CTGCCGGGGA TCATGTCTAC CCCGGAACGC CAAAGCTACC TCTCATTTAC CCGCCCTTAC CTCGACTTTC CGATCGTCAT CCTGGCCCAC GTCGGCGGCC CGCAACCACA CAAGCTCGAG GATCTTTACG GCCTGAAAAT CGCCGTGGTC GAAAACTACG CGCCCCACGA ACTGCTGCGC ACCCATCACC CCGACCTCAA CCTGGTGGCG ATGCCCAACG TCAGCTCCGC GTTGCAGGCC CTGGCTACCG ATGAAGTCGA CGCCGTGGTC GGAGACCTGG CATCCAGCGT CTGGAGCCTG CGCCAGCTCA AACTGGATGG TTTATATGTC AGCGGCGAAA CCCCTTACCG CTACCAACTG GCAATGGGCG TCCCGCGGGA CAACAAAATG CTGGTGGGGA TTCTGGACAA GGTGCTGGCC GACATGTCCC CGGAAGAAAT CAGCAGCATC CAGGAGCATT GGGTCGGCAA CGTCCTCGAT CACCGGACAT TCTGGTCGGA TCTGCTGATT TACGGGTTAC CGGGCCTCTC GCTTCTGGTC ATCGTGCTGG CGGTGGTGAT CCGCATCAAC CGTCGTCTGA GCTCGGAAAT TGCCCGACGC ATCGACCTCG AACAGGAGCT GCGCAGCAGC GAATACCATT ATCGCGGACT GGTGGAGAGT CTTTCGGCCA TCGCCTGGGA AGCGCGGATC AGCGATTTCA CCTACAGCTA TGTTTCGCCC CACGCCGAAG ACCTGCTCGG TTATCCACTG TCCCATTGGC TGATTCCGGG CTTCTGGCGC AACATCATTC ACCCGGCAGA CCTGACTCGT GCTCAGAGTT TCTGCGATCA TGAAGTGCTG GCCGGGCGCG ACCACAGCCT CGATTACCGG GTGATCACCG CTGACGGACG TTGTTTGTGG GTGCGCGACA TTGTCAGCCT GATCGAACAC GGCCACGAAC CGGTGATGCG CGGCCTGATG ATCGACATCA GCGAAACCAA GCGCACCGAA GAGGCGTTGC GCCTGTCAGA ACAAAAGTTC GCTTCAGTGT TCCAGCAATG CCCGGACATT CTGGTCATCG CCCGGCTCTC CGACGGCTGC CTGCTGGAGG TCAACGAAGC TTTTGAAGAA CAGATCGGGC TCAAGGCCGA AGAAGTGATT GGCCAGACCG CCACCGAACT CAACATCTGG GGCATTCCCG GAGTCGGCCC GGGCCTGCTT CAGCGCCTGC AAGCCGGCAG CATTCGCAAC CTGGAGATGC CCTTTCGCCG CAATAATGGC CAGGTGTTCA CCGGGCTGAT TTCCGCCGAA CCCTTCGAAC TCGACACCAC ACCGGCGCTG GTCGTGGTGG TGCGCGACAT TACTCAGCTC AAGGAAACCC AGCAGCAACT GCAAACCTCC GAAGAAAAGT TCGCCAAGGC CTTCCACGCC TCGCCGGACG GCCTGCTGCT GTCGCGCCAG AGCGATGGCC TGTTGCTGGA GGTCAACGAA GGCTTCAGTC GTATCACCGG TTTCAACAGC GCCATGTCTG TAGATCGCTC GGCGCTGGAC CTGGGCATCT GGGTCAACCT CAACGAACGC AAGCAAATGC TCGACCTGCT GCACCGCGAC GGGTTCGTTC GTGACTTCAG CTGCCACATC CGCCGCAGCG ACGGGCAGAT ACGCCTCTGC GAGGTGTCCA GCCGTCCGCT GCCGATCGGC GACGAAGACT GCATGTTGAC CATCGCCCGG GACATCACCG AACGCCACTT GATGCAAGAA AAGCTGCAAC AGGCCGCGAC CGTGTTCGAA AGTACCGCCG AAGGCGTGTT GATCACCGAC ACTCAGCAAC ACATCAGCGC CGTGAACCGG GCCTTCACCG AAATCACCGG TTACAGCGAA AGCGAAGCGC TCGGCCACAC CCCGCGCCTG CTTGCGTCCG GCCTGCACGA CAGCGCGTTC TACGCAGCGA TGTGGCATCA ATTGACCGAT GAAGGTCACT GGCAGGGAGA AATCTCCAAC CGGCGCAAAA ATGGCGAGCT GTACCCGAGC TGGCTGACTA TCAGCGCCGT GCGCAACCGC GACAAGTTCA TCACTCACTT CGTTGCGGTG TTCGCCGATA TTTCCAGCCT GAAGCACGCC CAGGCCAAAC TCGACTATCA GGCGCATCAC GACCCGCTCA CTGGCCTGCC GAACCGCACG CTGTTCGAAA GCCGTCTGTT GACGGCACTC AACAGCCAGC AGGAAAACGG CGGCCAGGGC GCAGTGCTGT TCCTCGACCT CGACCGCTTC AAGCACATCA ACGACAGCCT CGGTCATCCG GTCGGCGATT TGTTGCTCAA GGGCATCGCC GTGCGCCTCA AGGAGCAACT GCGGGATATC GACACCGTCG CGCGGCTGGG CGGCGACGAA TTCATCATTC TGCTGCCCGG CCTGCAGCAA CCCGGCGATG CCGACAACAT CGCCACCAAA CTGCTGAACT GCTTTGGCGC GCCGTTCCAG GCTGGCGAGC ATGAGTTCTT CATCAGCGCC AGCATCGGCA CCAGTCTCTA CCCGCGCGAC GGCTGCGATG TCGCAACCCT GATCAAAAAC GCGGACGCAG CGATGTATCG CTCCAAGGCC AAGGGCCGCA ACCGGGTCGA AAGCTACACC CGCGATCTCA CCGCCCAGGC CAGCGAGCGT GTGGCGCTGG AGCACGAACT TCGCCGCGCC ATCGAGCGCG AGGAGCTGTA CCTCTATTAC CAACCGAAAA TCAGCCTCGA CGATCACAGC CTGGTCGGCG CCGAAGCCCT GATCCGCTGG CGTCATCCGA ACTTCGGCGA AGTACCGCCA GAGCATTTCA TTCCGCTGGC GGAAGAAAAC GGGATGATTC TGCAAATCGG CGACTGGGTG CTGGAAACCG CCTGCCGGCA GATGTTCGAG TGGGGCCAGA TCTATGAATC CCTCGGCCCG CTGTCGGTCA ACCTCGCCGG CGCGCAACTG CGCCAGCCGA ACCTGCTGGG ACGCATCGAG CAACTGCTCA AGGACAACCG CCTGCGGCCG GAATTACTGC AACTGGAAAT TACCGAAAAC TTCATCATGA GCCAGGCTGA AGAAGCGCTG GCGGTGCTGC ACCAGCTCAA ACACCTGGGC GTGCAACTGG CCATCGACGA CTTCGGCACC GGTTATTCCT CGCTGAGCTA CCTCAAACGC CTGCCACTGG ACATCCTCAA GATCGACCAG TCTTTCGTCC GCGGCCTGCC CGATGACCCG CACGACGCGG CGATTGTCCG CGCCATCATC GCCCTGGGCC GCAGCATGCA ATTCACCGTG ATCGCCGAAG GCGTGGAAAC CCAGGCCCAG CAACAATTTC TCGCCGCCGA AGGCTGTGAG CAGATCCAGG GCTACATCGT CAGCCTGCCG CTGCCACCCG AGGAATTCGC CGCGACGTTT CTTCGCATAT CCGTATCGGA TTTTTCGGAT AGCACAGCCG AGAAACCGTC GCTATAA
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Protein sequence | MPRLASVLFL LPLMIWTATA DALTLNDEER SWLAAHPDLR LGVDASWPPF EFRDDQSRYQ GLAADYIDVI RQRLAIKLTP IEPVSWTVVL EQAKNGTIDL LPGIMSTPER QSYLSFTRPY LDFPIVILAH VGGPQPHKLE DLYGLKIAVV ENYAPHELLR THHPDLNLVA MPNVSSALQA LATDEVDAVV GDLASSVWSL RQLKLDGLYV SGETPYRYQL AMGVPRDNKM LVGILDKVLA DMSPEEISSI QEHWVGNVLD HRTFWSDLLI YGLPGLSLLV IVLAVVIRIN RRLSSEIARR IDLEQELRSS EYHYRGLVES LSAIAWEARI SDFTYSYVSP HAEDLLGYPL SHWLIPGFWR NIIHPADLTR AQSFCDHEVL AGRDHSLDYR VITADGRCLW VRDIVSLIEH GHEPVMRGLM IDISETKRTE EALRLSEQKF ASVFQQCPDI LVIARLSDGC LLEVNEAFEE QIGLKAEEVI GQTATELNIW GIPGVGPGLL QRLQAGSIRN LEMPFRRNNG QVFTGLISAE PFELDTTPAL VVVVRDITQL KETQQQLQTS EEKFAKAFHA SPDGLLLSRQ SDGLLLEVNE GFSRITGFNS AMSVDRSALD LGIWVNLNER KQMLDLLHRD GFVRDFSCHI RRSDGQIRLC EVSSRPLPIG DEDCMLTIAR DITERHLMQE KLQQAATVFE STAEGVLITD TQQHISAVNR AFTEITGYSE SEALGHTPRL LASGLHDSAF YAAMWHQLTD EGHWQGEISN RRKNGELYPS WLTISAVRNR DKFITHFVAV FADISSLKHA QAKLDYQAHH DPLTGLPNRT LFESRLLTAL NSQQENGGQG AVLFLDLDRF KHINDSLGHP VGDLLLKGIA VRLKEQLRDI DTVARLGGDE FIILLPGLQQ PGDADNIATK LLNCFGAPFQ AGEHEFFISA SIGTSLYPRD GCDVATLIKN ADAAMYRSKA KGRNRVESYT RDLTAQASER VALEHELRRA IEREELYLYY QPKISLDDHS LVGAEALIRW RHPNFGEVPP EHFIPLAEEN GMILQIGDWV LETACRQMFE WGQIYESLGP LSVNLAGAQL RQPNLLGRIE QLLKDNRLRP ELLQLEITEN FIMSQAEEAL AVLHQLKHLG VQLAIDDFGT GYSSLSYLKR LPLDILKIDQ SFVRGLPDDP HDAAIVRAII ALGRSMQFTV IAEGVETQAQ QQFLAAEGCE QIQGYIVSLP LPPEEFAATF LRISVSDFSD STAEKPSL
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