Gene Pfl01_5150 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPfl01_5150 
Symbol 
ID3717281 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas fluorescens Pf0-1 
KingdomBacteria 
Replicon accessionNC_007492 
Strand
Start bp5787803 
End bp5791549 
Gene Length3747 bp 
Protein Length1248 aa 
Translation table11 
GC content61% 
IMG OID 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_350878 
Protein GI77461371 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCAGAC TGGCGTCCGT GCTTTTTTTG CTGCCACTGA TGATCTGGAC CGCAACGGCT 
GACGCGCTGA CTCTGAACGA TGAAGAACGT AGCTGGCTGG CGGCTCACCC GGATTTGCGC
CTGGGTGTCG ATGCGTCGTG GCCACCCTTC GAGTTCCGCG ACGATCAGAG CCGCTATCAG
GGCCTGGCTG CGGACTATAT CGATGTGATT CGCCAACGCC TGGCGATCAA ACTCACGCCC
ATCGAGCCGG TGAGCTGGAC GGTAGTGCTC GAACAGGCGA AAAACGGCAC GATCGACCTG
CTGCCGGGGA TCATGTCTAC CCCGGAACGC CAAAGCTACC TCTCATTTAC CCGCCCTTAC
CTCGACTTTC CGATCGTCAT CCTGGCCCAC GTCGGCGGCC CGCAACCACA CAAGCTCGAG
GATCTTTACG GCCTGAAAAT CGCCGTGGTC GAAAACTACG CGCCCCACGA ACTGCTGCGC
ACCCATCACC CCGACCTCAA CCTGGTGGCG ATGCCCAACG TCAGCTCCGC GTTGCAGGCC
CTGGCTACCG ATGAAGTCGA CGCCGTGGTC GGAGACCTGG CATCCAGCGT CTGGAGCCTG
CGCCAGCTCA AACTGGATGG TTTATATGTC AGCGGCGAAA CCCCTTACCG CTACCAACTG
GCAATGGGCG TCCCGCGGGA CAACAAAATG CTGGTGGGGA TTCTGGACAA GGTGCTGGCC
GACATGTCCC CGGAAGAAAT CAGCAGCATC CAGGAGCATT GGGTCGGCAA CGTCCTCGAT
CACCGGACAT TCTGGTCGGA TCTGCTGATT TACGGGTTAC CGGGCCTCTC GCTTCTGGTC
ATCGTGCTGG CGGTGGTGAT CCGCATCAAC CGTCGTCTGA GCTCGGAAAT TGCCCGACGC
ATCGACCTCG AACAGGAGCT GCGCAGCAGC GAATACCATT ATCGCGGACT GGTGGAGAGT
CTTTCGGCCA TCGCCTGGGA AGCGCGGATC AGCGATTTCA CCTACAGCTA TGTTTCGCCC
CACGCCGAAG ACCTGCTCGG TTATCCACTG TCCCATTGGC TGATTCCGGG CTTCTGGCGC
AACATCATTC ACCCGGCAGA CCTGACTCGT GCTCAGAGTT TCTGCGATCA TGAAGTGCTG
GCCGGGCGCG ACCACAGCCT CGATTACCGG GTGATCACCG CTGACGGACG TTGTTTGTGG
GTGCGCGACA TTGTCAGCCT GATCGAACAC GGCCACGAAC CGGTGATGCG CGGCCTGATG
ATCGACATCA GCGAAACCAA GCGCACCGAA GAGGCGTTGC GCCTGTCAGA ACAAAAGTTC
GCTTCAGTGT TCCAGCAATG CCCGGACATT CTGGTCATCG CCCGGCTCTC CGACGGCTGC
CTGCTGGAGG TCAACGAAGC TTTTGAAGAA CAGATCGGGC TCAAGGCCGA AGAAGTGATT
GGCCAGACCG CCACCGAACT CAACATCTGG GGCATTCCCG GAGTCGGCCC GGGCCTGCTT
CAGCGCCTGC AAGCCGGCAG CATTCGCAAC CTGGAGATGC CCTTTCGCCG CAATAATGGC
CAGGTGTTCA CCGGGCTGAT TTCCGCCGAA CCCTTCGAAC TCGACACCAC ACCGGCGCTG
GTCGTGGTGG TGCGCGACAT TACTCAGCTC AAGGAAACCC AGCAGCAACT GCAAACCTCC
GAAGAAAAGT TCGCCAAGGC CTTCCACGCC TCGCCGGACG GCCTGCTGCT GTCGCGCCAG
AGCGATGGCC TGTTGCTGGA GGTCAACGAA GGCTTCAGTC GTATCACCGG TTTCAACAGC
GCCATGTCTG TAGATCGCTC GGCGCTGGAC CTGGGCATCT GGGTCAACCT CAACGAACGC
AAGCAAATGC TCGACCTGCT GCACCGCGAC GGGTTCGTTC GTGACTTCAG CTGCCACATC
CGCCGCAGCG ACGGGCAGAT ACGCCTCTGC GAGGTGTCCA GCCGTCCGCT GCCGATCGGC
GACGAAGACT GCATGTTGAC CATCGCCCGG GACATCACCG AACGCCACTT GATGCAAGAA
AAGCTGCAAC AGGCCGCGAC CGTGTTCGAA AGTACCGCCG AAGGCGTGTT GATCACCGAC
ACTCAGCAAC ACATCAGCGC CGTGAACCGG GCCTTCACCG AAATCACCGG TTACAGCGAA
AGCGAAGCGC TCGGCCACAC CCCGCGCCTG CTTGCGTCCG GCCTGCACGA CAGCGCGTTC
TACGCAGCGA TGTGGCATCA ATTGACCGAT GAAGGTCACT GGCAGGGAGA AATCTCCAAC
CGGCGCAAAA ATGGCGAGCT GTACCCGAGC TGGCTGACTA TCAGCGCCGT GCGCAACCGC
GACAAGTTCA TCACTCACTT CGTTGCGGTG TTCGCCGATA TTTCCAGCCT GAAGCACGCC
CAGGCCAAAC TCGACTATCA GGCGCATCAC GACCCGCTCA CTGGCCTGCC GAACCGCACG
CTGTTCGAAA GCCGTCTGTT GACGGCACTC AACAGCCAGC AGGAAAACGG CGGCCAGGGC
GCAGTGCTGT TCCTCGACCT CGACCGCTTC AAGCACATCA ACGACAGCCT CGGTCATCCG
GTCGGCGATT TGTTGCTCAA GGGCATCGCC GTGCGCCTCA AGGAGCAACT GCGGGATATC
GACACCGTCG CGCGGCTGGG CGGCGACGAA TTCATCATTC TGCTGCCCGG CCTGCAGCAA
CCCGGCGATG CCGACAACAT CGCCACCAAA CTGCTGAACT GCTTTGGCGC GCCGTTCCAG
GCTGGCGAGC ATGAGTTCTT CATCAGCGCC AGCATCGGCA CCAGTCTCTA CCCGCGCGAC
GGCTGCGATG TCGCAACCCT GATCAAAAAC GCGGACGCAG CGATGTATCG CTCCAAGGCC
AAGGGCCGCA ACCGGGTCGA AAGCTACACC CGCGATCTCA CCGCCCAGGC CAGCGAGCGT
GTGGCGCTGG AGCACGAACT TCGCCGCGCC ATCGAGCGCG AGGAGCTGTA CCTCTATTAC
CAACCGAAAA TCAGCCTCGA CGATCACAGC CTGGTCGGCG CCGAAGCCCT GATCCGCTGG
CGTCATCCGA ACTTCGGCGA AGTACCGCCA GAGCATTTCA TTCCGCTGGC GGAAGAAAAC
GGGATGATTC TGCAAATCGG CGACTGGGTG CTGGAAACCG CCTGCCGGCA GATGTTCGAG
TGGGGCCAGA TCTATGAATC CCTCGGCCCG CTGTCGGTCA ACCTCGCCGG CGCGCAACTG
CGCCAGCCGA ACCTGCTGGG ACGCATCGAG CAACTGCTCA AGGACAACCG CCTGCGGCCG
GAATTACTGC AACTGGAAAT TACCGAAAAC TTCATCATGA GCCAGGCTGA AGAAGCGCTG
GCGGTGCTGC ACCAGCTCAA ACACCTGGGC GTGCAACTGG CCATCGACGA CTTCGGCACC
GGTTATTCCT CGCTGAGCTA CCTCAAACGC CTGCCACTGG ACATCCTCAA GATCGACCAG
TCTTTCGTCC GCGGCCTGCC CGATGACCCG CACGACGCGG CGATTGTCCG CGCCATCATC
GCCCTGGGCC GCAGCATGCA ATTCACCGTG ATCGCCGAAG GCGTGGAAAC CCAGGCCCAG
CAACAATTTC TCGCCGCCGA AGGCTGTGAG CAGATCCAGG GCTACATCGT CAGCCTGCCG
CTGCCACCCG AGGAATTCGC CGCGACGTTT CTTCGCATAT CCGTATCGGA TTTTTCGGAT
AGCACAGCCG AGAAACCGTC GCTATAA
 
Protein sequence
MPRLASVLFL LPLMIWTATA DALTLNDEER SWLAAHPDLR LGVDASWPPF EFRDDQSRYQ 
GLAADYIDVI RQRLAIKLTP IEPVSWTVVL EQAKNGTIDL LPGIMSTPER QSYLSFTRPY
LDFPIVILAH VGGPQPHKLE DLYGLKIAVV ENYAPHELLR THHPDLNLVA MPNVSSALQA
LATDEVDAVV GDLASSVWSL RQLKLDGLYV SGETPYRYQL AMGVPRDNKM LVGILDKVLA
DMSPEEISSI QEHWVGNVLD HRTFWSDLLI YGLPGLSLLV IVLAVVIRIN RRLSSEIARR
IDLEQELRSS EYHYRGLVES LSAIAWEARI SDFTYSYVSP HAEDLLGYPL SHWLIPGFWR
NIIHPADLTR AQSFCDHEVL AGRDHSLDYR VITADGRCLW VRDIVSLIEH GHEPVMRGLM
IDISETKRTE EALRLSEQKF ASVFQQCPDI LVIARLSDGC LLEVNEAFEE QIGLKAEEVI
GQTATELNIW GIPGVGPGLL QRLQAGSIRN LEMPFRRNNG QVFTGLISAE PFELDTTPAL
VVVVRDITQL KETQQQLQTS EEKFAKAFHA SPDGLLLSRQ SDGLLLEVNE GFSRITGFNS
AMSVDRSALD LGIWVNLNER KQMLDLLHRD GFVRDFSCHI RRSDGQIRLC EVSSRPLPIG
DEDCMLTIAR DITERHLMQE KLQQAATVFE STAEGVLITD TQQHISAVNR AFTEITGYSE
SEALGHTPRL LASGLHDSAF YAAMWHQLTD EGHWQGEISN RRKNGELYPS WLTISAVRNR
DKFITHFVAV FADISSLKHA QAKLDYQAHH DPLTGLPNRT LFESRLLTAL NSQQENGGQG
AVLFLDLDRF KHINDSLGHP VGDLLLKGIA VRLKEQLRDI DTVARLGGDE FIILLPGLQQ
PGDADNIATK LLNCFGAPFQ AGEHEFFISA SIGTSLYPRD GCDVATLIKN ADAAMYRSKA
KGRNRVESYT RDLTAQASER VALEHELRRA IEREELYLYY QPKISLDDHS LVGAEALIRW
RHPNFGEVPP EHFIPLAEEN GMILQIGDWV LETACRQMFE WGQIYESLGP LSVNLAGAQL
RQPNLLGRIE QLLKDNRLRP ELLQLEITEN FIMSQAEEAL AVLHQLKHLG VQLAIDDFGT
GYSSLSYLKR LPLDILKIDQ SFVRGLPDDP HDAAIVRAII ALGRSMQFTV IAEGVETQAQ
QQFLAAEGCE QIQGYIVSLP LPPEEFAATF LRISVSDFSD STAEKPSL