| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_5086 |
|---|
| Symbol | rpoB |
|---|
| ID | 3715948 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | - |
|---|
| Start bp | 5714594 |
|---|
| End bp | 5718667 |
|---|
| Gene Length | 4074 bp |
|---|
| Protein Length | 1357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | |
|---|
| Product | DNA-directed RNA polymerase subunit beta |
|---|
| Protein accession | YP_350814 |
|---|
| Protein GI | 77461307 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0807983 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.53434 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTACT CATATACTGA GAAAAAACGT ATCCGCAAGG ACTTTAGCAA GTTGCCGGAC
GTCATGGATG TGCCTTACCT CCTGGCCATC CAGCTGGATT CGTATCGTGA ATTCTTGCAA
GCGGGAGCGA CTAAAGATCA GTTCCGCGAC GTGGGCCTGC ATGCGGCCTT CAAATCCGTT
TTCCCGATCA TCAGCTACTC CGGCAATGCT GCGCTGGAGT ACGTCGGTTA TCGCCTGGGC
GAACCGGCAT TTGATGTCAA AGAATGCGTA TTGCGCGGTG TAACTTTCGC CGTACCTTTG
CGGGTAAAAG TGCGCCTGAT CATTTTCGAC AAAGAATCGT CGAACAAAGC GATCAAGGAC
ATCAAAGAGC AAGAAGTCTA CATGGGTGAA ATCCCATTGA TGACTGAGAA CGGTACCTTC
GTAATCAACG GTACCGAGCG TGTTATCGTT TCCCAGCTGC ACCGTTCCCC GGGCGTGTTC
TTCGACCACG ACCGTGGCAA GACGCACAGC TCCGGCAAGC TGCTGTACTC CGCGCGCATC
ATTCCTTACC GCGGTTCGTG GCTGGACTTC GAGTTCGACC CGAAAGACTG CGTATTCGTG
CGTATCGACC GTCGTCGCAA GCTGCCGGCC TCGGTACTGC TGCGCGCGCT CGGTTATACC
ACCGAGGAAG TGCTGGACGC GTTCTACACT ACCAACGTAT TCCACGTGAA AGGCGAAGGC
CTGAGCCTGG AGCTGGTACC TCAGCGTCTG CGTGGTGAAG TTGCGGTTCT CGATATCCAG
GACGACAAAG GCAAGGTGAT CGTTGAGCAG GGCCGTCGTA TTACTGCCCG CCACATCAAC
CAGCTGGAAA AAGCCGGGAT CAAAGAGCTG GACGTGCCTC TGGACTACGT TCTGGGTCGT
ACCACCGCCA AGGCCATCGT GCACCCGGCT ACCGGTGAGA TCCTGGCAGA GTGCAACACC
GAGCTTTCGA CCGAGATCCT GGCGAAAATC GCCAAGGCCG GCGTCGTACG CATCGAAACT
CTGTACACCA ACGACATCGA CTGCGGTCCG TTCGTCTCCG ACACGCTGAA GATCGACTCC
ACCAGTAACC AATTGGAAGC GCTGGTCGAG ATCTATCGCA TGATGCGTCC GGGTGAACCG
CCAACCAAAG ACGCTGCCGA GACCCTGTTC AACAACCTGT TCTTCAGTCC TGAGCGCTAT
GACCTGTCTG CGGTCGGCCG GATGAAGTTC AACCGTCGTA TCGGTCGTAC CGAGATCGAA
GGTTCGGGCG TGCTGTGCAA GGAAGACATC GTCGCGGTAC TGAAGACTCT GGTCGACATC
CGTAACGGTA AAGGCATCGT CGACGACATC GACCACCTGG GTAACCGTCG TGTTCGCTGC
GTAGGCGAAA TGGCCGAGAA CCAGTTCCGC GTTGGCCTGG TACGTGTTGA GCGTGCGGTC
AAAGAGCGTC TGTCGATGGC TGAAAGCGAA GGCCTGATGC CGCAAGATCT GATCAACGCC
AAGCCAGTGG CTGCGGCGGT GAAAGAGTTC TTCGGTTCCA GCCAGCTGTC GCAGTTCATG
GACCAGAACA ACCCGCTGTC CGAGATCACC CACAAGCGTC GTGTCTCTGC ACTCGGCCCT
GGCGGTCTGA CTCGTGAGCG CGCGGGCTTC GAAGTCCGTG ACGTACACCC GACTCACTAT
GGTCGTGTCT GCCCGATTGA AACGCCGGAA GGTCCGAACA TCGGGCTGAT CAACTCCCTG
GCTGCTTACG CTCGCACCAA CCAGTACGGC TTCCTCGAGA GCCCGTACCG CGTGGTGAAA
GAGGGTGTGG TCACCGACGA CATCGTGTTC CTGTCCGCCA TTGAAGAAGC TGATCACGTG
ATCGCGCAGG CTTCGGCGAC CATGAACGAG CAGAAAGTCC TGATCGATGA ACTGGTGGCC
GTGCGTCACC TGAACGAATT CACCGTCAAG GCGCCGGAAG ACGTCACCTT GATGGACGTT
TCGCCGAAGC AGGTAGTTTC TGTTGCAGCG TCGCTGATTC CGTTCCTCGA GCATGACGAC
GCCAACCGTG CGTTGATGGG TTCGAACATG CAGCGTCAGG CTGTACCAAC CCTGCGTGCT
GACAAGCCGC TGGTCGGTAC CGGCATGGAG CGTAACGTGG CTCGCGACTC CGGCGTTTGC
GTCGTGGCTC GTCGTGGCGG CGTGATCGAC TCCGTTGATG CCAGCCGTAT CGTGGTTCGT
GTTGCTGATG ACGAAGTTGA AACCGGCGAA GCTGGTGTCG ACATCTACAA CCTGACCAAA
TACACCCGCT CGAACCAGAA CACCTGCATC AACCAGCGTC CGCTGGTGAG CAAAGGTGAT
CGCGTTCAGC GTAGCGACAT CATGGCCGAC GGCCCGTCCA CCGACATGGG TGAGCTGGCT
CTGGGTCAGA ACATGCGCAT CGCGTTCATG GCATGGAACG GCTTCAACTT CGAAGACTCC
ATCTGCCTTT CCGAGCGTGT GGTGCAGGAA GACCGCTTCA CCACGATCCA CATTCAGGAA
CTGACCTGTG TGGCCCGTGA CACCAAGCTT GGCCCAGAGG AAATCACTGC GGACATCCCG
AACGTGGGTG AAGCTGCGCT GAACAAGCTG GACGAAGCCG GTATCGTTTA CGTAGGTGCT
GAAGTTGGCG CAGGCGACAT CCTGGTAGGC AAGGTCACTC CGAAAGGCGA GACCCAACTG
ACTCCGGAAG AAAAACTGCT GCGCGCAATC TTCGGTGAAA AAGCCAGCGA CGTTAAAGAC
ACTTCCCTGC GCGTGCCAAC GGGCACCAAA GGCACTGTCA TCGACGTACA GGTCTTCACG
CGTGACGGCG TTGAGCGTGA TGCTCGTGCA CTGTCGATCG AGAAGTCCCA GCTGGACGAG
ATCCGCAAGG ATCTGAACGA AGAGTTCCGC ATCGTTGAAG GCGCGACCTT CGAGCGTCTG
CGTTCCGCTC TGGTAGGCCA CAAGGCTGAA GGCGGCGCCG GCCTGAAGAA AGGTCAGGAC
ATCACCGACG AAGTACTCGA CGGTCTTGAG CATGGTCAGT GGTTCAAACT GCGCATGGCT
GAAGATGCTC TGAACGAGCA GCTCGAGAAG GCTCAGGCCT ACATCGTTGA TCGTCGCCGT
CTGCTGGACG ACAAGTTCGA AGACAAGAAG CGCAAACTGC AGCAGGGCGA TGACCTGGCT
CCAGGCGTGC TGAAGATCGT CAAGGTTTAC CTGGCAATCC GTCGTCGCAT CCAGCCGGGC
GACAAGATGG CCGGTCGTCA CGGTAACAAA GGTGTGGTCT CCGTGATCAT GCCGGTTGAA
GACATGCCGC ACGATGCCAA TGGCACCCCG GTCGACGTGG TCCTCAACCC GCTGGGCGTA
CCTTCGCGTA TGAACGTTGG TCAGATCCTT GAAACCCACC TGGGCCTCGC GGCCAAAGGT
CTGGGCGAGA AGATCAACCG GATGGTCGAA GAGCAGCGCA AAGTCGCTGA ACTGCGTACC
TTCCTGGACG AGATCTACAA CCAGATCGGC GGTCGTAACG AAGATCTGGA CAGCTTCTCC
GATCAGGAAA TCCTGGATCT GGCGAAGAAC CTGCGTGGCG GTGTTCCAAT GGCCACTCCA
GTGTTCGACG GTGCCAAGGA AAGCGAAATC AAGGCCATGC TGAAACTGGC AGACCTGCCA
GAAAGCGGCC AGATGCAGCT GACCGACGGC CGTACCGGCA ACAAGTTCGA GCGTCCAGTT
ACCGTTGGCT ACATGTACAT GCTGAAGCTG AACCACTTGG TAGACGACAA GATGCACGCG
CGTTCTACCG GTTCGTACAG CCTGGTTACC CAGCAGCCGC TGGGTGGTAA GGCGCAGTTC
GGTGGTCAGC GTTTCGGGGA GATGGAGGTC TGGGCACTGG AAGCATACGG TGCTGCTTAC
ACTCTGCAAG AAATGCTCAC AGTGAAGTCG GACGATGTGA ACGGCCGGAC CAAGATGTAC
AAAAACATCG TGGACGGCGA TCACCGTATG GAGCCGGGCA TGCCCGAGTC CTTCAACGTG
TTGATCAAGG AAATTCGTTC CCTCGGCATC GATATCGATC TGGAAACCGA ATAA
|
|---|
| Protein sequence | MAYSYTEKKR IRKDFSKLPD VMDVPYLLAI QLDSYREFLQ AGATKDQFRD VGLHAAFKSV
FPIISYSGNA ALEYVGYRLG EPAFDVKECV LRGVTFAVPL RVKVRLIIFD KESSNKAIKD
IKEQEVYMGE IPLMTENGTF VINGTERVIV SQLHRSPGVF FDHDRGKTHS SGKLLYSARI
IPYRGSWLDF EFDPKDCVFV RIDRRRKLPA SVLLRALGYT TEEVLDAFYT TNVFHVKGEG
LSLELVPQRL RGEVAVLDIQ DDKGKVIVEQ GRRITARHIN QLEKAGIKEL DVPLDYVLGR
TTAKAIVHPA TGEILAECNT ELSTEILAKI AKAGVVRIET LYTNDIDCGP FVSDTLKIDS
TSNQLEALVE IYRMMRPGEP PTKDAAETLF NNLFFSPERY DLSAVGRMKF NRRIGRTEIE
GSGVLCKEDI VAVLKTLVDI RNGKGIVDDI DHLGNRRVRC VGEMAENQFR VGLVRVERAV
KERLSMAESE GLMPQDLINA KPVAAAVKEF FGSSQLSQFM DQNNPLSEIT HKRRVSALGP
GGLTRERAGF EVRDVHPTHY GRVCPIETPE GPNIGLINSL AAYARTNQYG FLESPYRVVK
EGVVTDDIVF LSAIEEADHV IAQASATMNE QKVLIDELVA VRHLNEFTVK APEDVTLMDV
SPKQVVSVAA SLIPFLEHDD ANRALMGSNM QRQAVPTLRA DKPLVGTGME RNVARDSGVC
VVARRGGVID SVDASRIVVR VADDEVETGE AGVDIYNLTK YTRSNQNTCI NQRPLVSKGD
RVQRSDIMAD GPSTDMGELA LGQNMRIAFM AWNGFNFEDS ICLSERVVQE DRFTTIHIQE
LTCVARDTKL GPEEITADIP NVGEAALNKL DEAGIVYVGA EVGAGDILVG KVTPKGETQL
TPEEKLLRAI FGEKASDVKD TSLRVPTGTK GTVIDVQVFT RDGVERDARA LSIEKSQLDE
IRKDLNEEFR IVEGATFERL RSALVGHKAE GGAGLKKGQD ITDEVLDGLE HGQWFKLRMA
EDALNEQLEK AQAYIVDRRR LLDDKFEDKK RKLQQGDDLA PGVLKIVKVY LAIRRRIQPG
DKMAGRHGNK GVVSVIMPVE DMPHDANGTP VDVVLNPLGV PSRMNVGQIL ETHLGLAAKG
LGEKINRMVE EQRKVAELRT FLDEIYNQIG GRNEDLDSFS DQEILDLAKN LRGGVPMATP
VFDGAKESEI KAMLKLADLP ESGQMQLTDG RTGNKFERPV TVGYMYMLKL NHLVDDKMHA
RSTGSYSLVT QQPLGGKAQF GGQRFGEMEV WALEAYGAAY TLQEMLTVKS DDVNGRTKMY
KNIVDGDHRM EPGMPESFNV LIKEIRSLGI DIDLETE
|
|---|
| |