| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_5085 |
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| Symbol | |
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| ID | 3715947 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas fluorescens Pf0-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007492 |
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| Strand | - |
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| Start bp | 5710331 |
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| End bp | 5714530 |
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| Gene Length | 4200 bp |
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| Protein Length | 1399 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_350813 |
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| Protein GI | 77461306 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00230086 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.866295 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAAGACC TACTGAATTT GCTGAAAAAC CAGGGTCAAG TCGAAGAGTT CGACGCCATC
CGTATCGGAT TGGCCTCGCC TGAGATGATC CGCTCGTGGT CGTTCGGTGA AGTTAAAAAG
CCGGAAACCA TCAACTACCG TACGTTCAAA CCTGAGCGTG ACGGTCTGTT CTGCGCCAAG
ATCTTTGGCC CGGTAAAGGA TTACGAGTGC CTGTGCGGTA AGTACAAGCG CTTGAAGCAC
CGTGGTGTGA TCTGCGAGAA GTGCGGCGTT GAAGTTGCAC TGGCCAAGGT TCGTCGTGAG
CGCATGGCGC ACATCGAACT GGCTTCGCCG GTTGCCCACA TCTGGTTCCT GAAATCGCTG
CCGTCCCGTA TCGGCCTGCT GATGGACATG ACCCTGCGTG ATATCGAACG CGTTCTCTAT
TTCGAGAGCT ATGTCGTTAT CGACCCAGGC ATGACCACTC TTGAAAAAGG TCAGCTGCTG
AACGACGAGC AGTACTTCGA AGCGCTGGAA GAATTCGGTG ACGATTTCGA CGCCCGTATG
GGTGCTGAGG CTGTCCGTGA ACTGCTGCAC GCTATCGACC TGGAACACGA GATTGGCCGT
CTGCGTGAAG AAATTCCGCA AACCAACTCC GAAACCAAGA TCAAGAAGCT GTCCAAGCGT
CTGAAGTTGA TGGAAGCCTT CCAGGGTTCC GGCAACCTGC CAGAGTGGAT GGTGCTGACC
GTTCTGCCGG TTCTGCCGCC AGATCTGCGT CCACTGGTCC CGCTGGATGG CGGTCGTTTC
GCGACTTCCG ACCTCAACGA TCTGTATCGT CGAGTGATCA ACCGTAACAA CCGTTTGAAG
CGCCTGCTGG ATCTGTCCGC TCCTGACATC ATCGTGCGCA ACGAAAAGCG TATGTTGCAG
GAAGCTGTCG ATGCACTGCT CGACAACGGT CGTCGTGGCC GCGCTATCAC CGGTTCGAAC
AAGCGTCCTC TGAAATCCCT GGCTGACATG ATCAAGGGTA AGCAAGGTCG TTTCCGTCAG
AACTTGCTCG GTAAGCGTGT TGACTACTCG GGTCGTTCGG TAATTACCGT AGGTCCGACC
CTGCGTCTGC ATCAGTGCGG TCTGCCGAAG AAGATGGCTC TCGAGCTGTT CAAACCGTTC
ATTTTCGGCA AGCTGGAAAT GCGTGGTCTG GCGACCACCA TCAAAGCGGC CAAGAAAATG
GTCGAGCGCG AACTGCCAGA GGTTTGGGAT GTTCTCGCTG AAGTGATTCG CGAACACCCG
GTTCTTCTCA ACCGTGCACC GACCCTTCAC CGTCTGGGTA TCCAGGCGTT TGAACCGGTA
CTGATCGAAG GTAAGGCTAT CCAGCTGCAC CCTCTGGTCT GCGCCGCGTA CAACGCTGAC
TTCGACGGCG ACCAAATGGC CGTGCACGTG CCGCTGACAC TGGAAGCCCA GCTCGAAGCG
CGTGCGTTGA TGATGTCGAC CAACAACATT CTGTCGCCAG CCAACGGTGA GCCAATCATC
GTTCCGTCGC AGGACGTTGT ATTGGGTCTG TACTACATGA CTCGTGAAGC GATCAACGCC
AAGGGCGAAG GTCGTGTGTT CGCGGATCTG CAGGAAGTTG ACCGTGTGTT CCGTGCCGGC
GAAGCCGCAC TGCACGCCAA GATCAAGGTT CGTATCAACG AAACCGTGAA CGATCGTGAC
GGCAACAGCG TGAACAACAC TCGTATCGTC GACACCACTG TCGGCCGTGC GCTGCTGTTT
CAGGTTGTGC CAAAAGGTCT GTCGTTCGAC GTCGTCAACC TGCCGATGAA GAAAAAGGCG
ATCTCCAAGC TGATCAACCA GTGCTACCGC GTGGTTGGTC TGAAAGAGAC CGTGATCTTC
GCTGACCAGT TGATGTACAC CGGTTTTGCC TATTCGACCA TTTCCGGCGT TTCCATCGGT
GTTAACGATT TCGTTATCCC GGATGAAAAA GCCCGCATCA TCGGTGCTGC CACCGACGAA
GTGAAAGAAA TCGAGAGCCA GTACGCCTCC GGCCTGGTAA CCCAGGGCGA GAAGTACAAC
AAAGTGATCG ACCTTTGGTC GAAAGCGAAC GACGAAGTCT CCAAGGCGAT GATGGCCAAC
CTCTCGAAAG AGAAAGTCAT CGACCGTCAC GGCGACGAAG TCGAGCAAGA ATCGTTCAAC
TCGATGTACA TGATGGCAGA CTCGGGTGCG CGGGGTTCCG CAGCACAGAT TCGTCAGCTG
GCCGGTATGC GTGGTCTGAT GGCCAAGCCG GACGGTTCCA TCATTGAAAC GCCGATTACT
GCGAACTTCC GTGAAGGTCT GAGCGTACTC CAGTACTTCA TCTCGACTCA CGGTGCTCGT
AAAGGTCTGG CGGATACCGC GTTGAAAACT GCGAACTCCG GTTACCTGAC TCGTCGTCTG
GTAGACGTGG CGCAGGATCT GGTCGTGACC GAGATCGATT GCGGCACCGA ACACGGTCTG
CTGATGACTC CGCACATTGA AGGCGGTGAC GTTGTAGAGC CGTTGGGTGA GCGCGTATTG
GGTCGTGTCA TTGCCCGTGA CGTATTCAAG CCGGGTACCG AGGACGTCAT CGTTCCTGCT
GGCACTCTGG TAGACGAGAA GTGGGTCGAG TTCATCGAGC TGAACAGCAT CGACGAAGTG
ATCGTGCGTT CGCCGATCAG CTGCGAAACC CGCTATGGCA TTTGCGCCAA GTGCTACGGC
CGTGATCTCG CTCGTGGTCA CCAGGTGAAC ATCGGTGAAG CAGTCGGCGT TATCGCTGCC
CAGTCCATCG GTGAGCCGGG TACCCAGCTG ACGATGCGTA CGTTCCACAT CGGTGGTGCG
GCAAGCCGTA CTTCCGCAGC CGACAGCGTT CAGGTGAAGA ATGGCGGTAC CGTCCGTCTG
CACAACCTGA AACACGTTGA GCGTGTGGAT GGCAACCTGG TTGCTGTGTC CCGTTCCGGT
GAGCTGGCAA TCGCTGACGA CTTCGGTCGT GAGCGCGAGC GTTACAAGCT GCCGTACGGT
GCCGTGATTT CGGTTAAAGA AGGTGACAAG GTCGACGCTG GCGCAATCGT GGCCAAGTGG
GATCCGCACA CTCACCCGAT CGTTACCGAA ATGAAAGGTA CCGTGACCTA CGTGGGCATG
GAAGAAGGCA TCACGATCAA GCGTCAGACT GACGAATTGA CCGGTATGAC CAACATTGAA
GTACTCGATG CCAAAGACCG TCCGGCTGCC GGCAAGGACA TTCGTCCTGC GGTGAAGATG
GTTGATGACA ACGGCAAGGA TCTGTTGCTG CCAGGCACTG ACGTTATCGC TCAGTACTTC
CTGCCAGCCA ACGCCCTGGT CGGTGTTGCG GACGGTGCGA AGATTGCGAT CGGTGATGTT
ATCGCTCGTA TCCCGCAAGA AACTTCGAAA ACCCGTGACA TCACCGGTGG TCTGCCGCGT
GTTGCAGACC TGTTCGAAGC CCGTCGTCCG AAAGAAGCGT CGATTCTGGC TGAAGTCAGC
GGCACCATCG CGTTCGGTAA AGAGACCAAG GGCAAGCGCC GTCTGGTCAT TACCCCGAAC
GACGGTAGTG ATCCGTATGA AGAGCTGATT CCGAAGTGGC GTCACCTGAA CGTGTTCGAA
GGCGAGCAGG TAAACCGCGG CGAAGTTATC TCCGACGGTC CGAGCGATCC GCACGACATC
CTGCGTCTGC TGGGTGTGAG TGCGCTGGCC AAGTACATCG TCAACGAGAT CCAGGACGTT
TACCGTCTGC AAGGCGTGAA GATCAACGAC AAGCACATCG AGACCATCCT GCGTCAGATG
CTGCGTAAGG TTGAGATCTC CGAGTCTGGC GATTCCAGCT TCATCAAGGG CGACCAGATG
GAACTGACTC ACGTTCTGGT AGAGAACGAG CGTCTGAACG CGGAAGACAA GTTTGTCTCC
AAGTTCACCC GCGTTCTGCT GGGTATCACC AAGGCGTCGT TGTCGACCGA ATCGTTCATC
TCGGCGGCTT CCTTCCAGGA AACCACCCGC GTGCTGACCG AGGCGGCGGT AACCGGCAAG
CGCGATTACC TGCGCGGCCT GAAAGAAAAC GTGGTCGTGG GTCGTCTGAT CCCGGCCGGT
ACCGGTCTGG CTTATCACAG CGAGCGCAAG CGTCGTCGTG ATGCAGACAA GCCGTTGCGC
GTAAGCGCCA GTGAAGTGGA AGCTGCACTG ACCGAAGCGC TGAACTCGAG CGGTAACTGA
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| Protein sequence | MKDLLNLLKN QGQVEEFDAI RIGLASPEMI RSWSFGEVKK PETINYRTFK PERDGLFCAK
IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVALAKVRRE RMAHIELASP VAHIWFLKSL
PSRIGLLMDM TLRDIERVLY FESYVVIDPG MTTLEKGQLL NDEQYFEALE EFGDDFDARM
GAEAVRELLH AIDLEHEIGR LREEIPQTNS ETKIKKLSKR LKLMEAFQGS GNLPEWMVLT
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLSAPDI IVRNEKRMLQ
EAVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPT
LRLHQCGLPK KMALELFKPF IFGKLEMRGL ATTIKAAKKM VERELPEVWD VLAEVIREHP
VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
RALMMSTNNI LSPANGEPII VPSQDVVLGL YYMTREAINA KGEGRVFADL QEVDRVFRAG
EAALHAKIKV RINETVNDRD GNSVNNTRIV DTTVGRALLF QVVPKGLSFD VVNLPMKKKA
ISKLINQCYR VVGLKETVIF ADQLMYTGFA YSTISGVSIG VNDFVIPDEK ARIIGAATDE
VKEIESQYAS GLVTQGEKYN KVIDLWSKAN DEVSKAMMAN LSKEKVIDRH GDEVEQESFN
SMYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLSVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDLVVT EIDCGTEHGL LMTPHIEGGD VVEPLGERVL
GRVIARDVFK PGTEDVIVPA GTLVDEKWVE FIELNSIDEV IVRSPISCET RYGICAKCYG
RDLARGHQVN IGEAVGVIAA QSIGEPGTQL TMRTFHIGGA ASRTSAADSV QVKNGGTVRL
HNLKHVERVD GNLVAVSRSG ELAIADDFGR ERERYKLPYG AVISVKEGDK VDAGAIVAKW
DPHTHPIVTE MKGTVTYVGM EEGITIKRQT DELTGMTNIE VLDAKDRPAA GKDIRPAVKM
VDDNGKDLLL PGTDVIAQYF LPANALVGVA DGAKIAIGDV IARIPQETSK TRDITGGLPR
VADLFEARRP KEASILAEVS GTIAFGKETK GKRRLVITPN DGSDPYEELI PKWRHLNVFE
GEQVNRGEVI SDGPSDPHDI LRLLGVSALA KYIVNEIQDV YRLQGVKIND KHIETILRQM
LRKVEISESG DSSFIKGDQM ELTHVLVENE RLNAEDKFVS KFTRVLLGIT KASLSTESFI
SAASFQETTR VLTEAAVTGK RDYLRGLKEN VVVGRLIPAG TGLAYHSERK RRRDADKPLR
VSASEVEAAL TEALNSSGN
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