Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pfl01_5073 |
Symbol | rpsC |
ID | 3714176 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas fluorescens Pf0-1 |
Kingdom | Bacteria |
Replicon accession | NC_007492 |
Strand | - |
Start bp | 5701530 |
End bp | 5702216 |
Gene Length | 687 bp |
Protein Length | 228 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | |
Product | 30S ribosomal protein S3 |
Protein accession | YP_350801 |
Protein GI | 77461294 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00000000216562 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.14822 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGTCAGA AAGTACATCC CATTGGCATT CGCCTGGGAA TCGTCAAGGA GCACACCTCC GTCTGGTACG CAGACGGTCG GACTTATGCG GACTACTTGT TCGCTGATCT GAAGGTGCGT GAATACCTCC AAGACAAACT AAAAAGCGCG TCCGTAAGCC GTATCGATAT CCATCGTCCG GCCCAAACTG CACGCATCAC CATCCACACC GCTCGTCCAG GTATCGTTAT CGGGAAGAAA GGTGAAGATG TTGAGAAACT GCGTCAGGAC CTGACCAAGC AAATGGGTGT GCCTGTGCAC ATCAATATCG AAGAGATCCG CAAGCCGGAG CTCGACGGTA TGCTGGTTGC GCAGAGCGTA GCTCAGCAGC TGGAGCGTCG TGTAATGTTC CGTCGCGCCA TGAAGCGCGC TGTACAGAAC GCCATGCGCA TTGGTGCCAA AGGCATCAAA ATCCAAGTGA GCGGTCGTCT CGGCGGTGCT GAAATCGCAC GTACTGAATG GTATCGCGAA GGTCGTGTGC CACTGCACAC CCTGCGTGCC GACATCGACT ATGCCAACTA CGAAGCTCAC ACCACTTACG GTGTGATCGG TGTAAAGGTT TGGATCTTCA AAGGCGAAGT AATTGGTGGT CGCCAAGAAG AGCTGAAGCC ACAAGCACCA GCGCCTCGTA AAAAAGCTGC TAAGTAA
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Protein sequence | MGQKVHPIGI RLGIVKEHTS VWYADGRTYA DYLFADLKVR EYLQDKLKSA SVSRIDIHRP AQTARITIHT ARPGIVIGKK GEDVEKLRQD LTKQMGVPVH INIEEIRKPE LDGMLVAQSV AQQLERRVMF RRAMKRAVQN AMRIGAKGIK IQVSGRLGGA EIARTEWYRE GRVPLHTLRA DIDYANYEAH TTYGVIGVKV WIFKGEVIGG RQEELKPQAP APRKKAAK
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