| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_5059 |
|---|
| Symbol | secY |
|---|
| ID | 3714162 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | - |
|---|
| Start bp | 5695085 |
|---|
| End bp | 5696413 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | preprotein translocase subunit SecY |
|---|
| Protein accession | YP_350787 |
|---|
| Protein GI | 77461280 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00000898122 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.284155 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAAGC AAGGTGCTCT CTCTGCGCTC GGCAAAGGCG GTATGTCTGA ACTTTGGGCT
CGTCTGCGTT TTCTGTTCCT GGCGATTATC GTCTACCGAA TAGGCGCACA CATCCCGGTT
CCAGGTATCA ACCCGGACCG ACTCGCAGAC CTGTTTCGAC AGAATGAGGG GACCATTCTT
AGCTTGTTCA ACATGTTTTC CGGCGGCGCG CTGGAACGGA TGAGCATCTT TGCGTTGGGG
ATCATGCCGT ACATTTCGGC TTCGATCATC ATGCAGTTGA TGACCGCCGT CAGCCCGCAG
CTGGAGCAGT TGAAGAAGGA AGGTGAAGCT GGCCGTCGCA AGATCAGCCA GTACACCCGC
TACGGCACCG TCGTCCTGGC TCTCGTTCAG GCCATTGGCA TGTCCATTGG TCTGGCGGGG
CAGGGCGTTG CGTTCACTGG TGACTTTGGC TTCCATTTCG TCGCGGTCTC CACGTTTGTG
GCTGGCGCGA TGTTCATGAT GTGGCTGGGT GAGCAGATTA CTGAGCGTGG TGTAGGCAAC
GGTATCTCGA TGTTGATTTT TTCGGGTATC GTCGCCGGTC TTCCGAGAGC AATCGGGCAG
TCTTTCGAGT CTGCGCGTCA GGGCGATATC AACATCTTCG CTTTGGTTGC CATCGGTTTG
CTGGCAGTAG CGATTATCGG TTTCGTGGTG TTCATTGAGC GTGGTCAGCG TCGTATCGCT
GTTCACTACG CCAAGCGTCA GCAGGGCCGC AAGGTTTTTG CTGCGCAGAC AAGCCACTTG
CCGCTGAAGG TGAACATGGC CGGCGTTATT CCGGCTATTT TCGCGAGCAG CATTTTGCTG
TTCCCGGCTT CGCTGGGTGC CTGGTTCGGT CAGTCTGAAG GTATGGGCTG GTTGCAGGAC
ATCTCGCAGT CGATCGCTCC TGGTCAGCCG TTGAATATTC TGCTGTTTAG TGCAGGGATT
ATTTTCTTCT GCTTCTTCTA TACGGCGTTG ATGTTCAATC CGAAAGACGT AGCGGAAAAC
CTGAAGAAGT CCGGTGCCTT TATTCCGGGC ATCCGTCCAG GTGAGCAGTC CGCGCGCTAT
ATTGATGGCG TTTTGACTCG CTTGACCATG TTCGGTGCTC TTTACATGAC GGCCGTGTGC
TTGTTGCCCC AGTTCCTGGT GGTTGCAGCA AACGTTCCGT TCTACCTTGG CGGGACCTCG
TTGCTGATCG TGGTCGTGGT TGTGATGGAC TTCATGTCCC AAGTACAATC GCACCTCGTT
TCGCACCAGT ACGAATCCCT GATGAAGAAA GCCAACCTGA AGGGTTACGG CAGCGGCATG
TTGCGCTGA
|
|---|
| Protein sequence | MAKQGALSAL GKGGMSELWA RLRFLFLAII VYRIGAHIPV PGINPDRLAD LFRQNEGTIL
SLFNMFSGGA LERMSIFALG IMPYISASII MQLMTAVSPQ LEQLKKEGEA GRRKISQYTR
YGTVVLALVQ AIGMSIGLAG QGVAFTGDFG FHFVAVSTFV AGAMFMMWLG EQITERGVGN
GISMLIFSGI VAGLPRAIGQ SFESARQGDI NIFALVAIGL LAVAIIGFVV FIERGQRRIA
VHYAKRQQGR KVFAAQTSHL PLKVNMAGVI PAIFASSILL FPASLGAWFG QSEGMGWLQD
ISQSIAPGQP LNILLFSAGI IFFCFFYTAL MFNPKDVAEN LKKSGAFIPG IRPGEQSARY
IDGVLTRLTM FGALYMTAVC LLPQFLVVAA NVPFYLGGTS LLIVVVVVMD FMSQVQSHLV
SHQYESLMKK ANLKGYGSGM LR
|
|---|
| |