Gene Pfl01_4988 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPfl01_4988 
Symbol 
ID3714946 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas fluorescens Pf0-1 
KingdomBacteria 
Replicon accessionNC_007492 
Strand
Start bp5617831 
End bp5619747 
Gene Length1917 bp 
Protein Length638 aa 
Translation table11 
GC content63% 
IMG OID 
Productsigma54 specific transcriptional regulator 
Protein accessionYP_350716 
Protein GI77461209 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACGACA ACCATTTGAG TCGCCATGCC CAACAGGTTC TCACCGTCAC CCAGGGCAAG 
CCGCACCTGC ATGGCCCCGG TGCCGACCCG TCGATTGCCC GCTCGTGGCT GCGTTGTCTT
GAGGACTATC ACCTCGACCC GGCCCTGACC ATGGCGCCGA CCGTGCTAGA ACACGGTCGT
GTCCTCGAAA GCCGCGAACG GCTGCAACAG GTGTTGCAGA TCGCCGGCAA TGAAATGAGC
AGCCTGCATC AACAACTCTC CGGCGCCGGC CATGCGGTAC TGCTGACCGA CGCACGCGGG
GTGATCCTCA ACTGCGTCAC CGCCCCCGCC GAACGCAAGA TTTTCGAACG CGCCGGCCTG
TGGCTGGGCT CCGACTGGAG CGAGGCCTGC GAGGGCACCA ACGGGATCGG CACTTGCCTC
GTTGAACGTC AGGCCCTGAC GATTCATCAG GATGAACACT TTCGCGGCCG CCATACCGGC
CTGACCTGCT CGGCGAGCCC GGTGTTCGAC CCGCACGGCG AACTGCTGGC GGTGCTTGAT
GTTTCCTCGG CCCGGCCTGA CGTCTCGCGG CAGAGCCAGT TCCACACCAT GGCGCTGGTC
AATTTGTCGG CGAAGATGAT CGAGAGCTGC TATTTCCTGC GCTGTTTCGA TAACCAATGG
TTGCTGCGTT TCCATCTCCA GGCCGAGTCC GTCGGGCTGT TCAGCGAAGG GTTGCTGGCG
TTTGACGGGG AAGGGCGGAT CAGTGCGGTC AATCAGAGTG CCTTGAACCT GCTCGGCCAT
ATTCGCGGTG GTTTGCTGGG CAAACCGGTG GAGGCGTTTT TCGATTGTTC GCTGGATGAG
TTGCTCGGGC GCGCCAGTGC CAATGCCAGT GCCAGTTGGC CGTTGCGTAC TCGTGACGGA
CGGCATCTGT TTGCGGTGCT GCGTGGCGAA ACTCGCCGGC CGCTGCCGGT CGCGCCGGCT
CACGCGCCTG TGGAAGCGCC GCGTCTTGCA GGCATTTGCC TCGGTGATGC GACGTTGCAG
GCGGATTTCC GCAAGTCGCT GCGGGTATTC GAGCGCGACG TGCCGCTGCT GATCAACGGT
GAAACAGGCT CCGGCAAAGA AGCATTCGCC AAGGCTGTGC ACAACGCCAG TCAGCGCGCC
GGCAAAGCCT TCGTTGCCCT CAACTGCGCG GCGATTCCCG AAAGCCTGAT CGAGAGCGAA
CTGTTCGGCT ATCGCGGCGG CAGCTTCACC GGCGCGCGCA AGGACGGTAT GCGCGGCAAG
TTGCAGCAGG CCGATGGCGG CACGCTGTTC CTCGATGAAA TCGGCGACAT GCCGCTGGCT
CTGCAAACCC GTCTGCTGCG GGTGCTGGAA GACCGGCAAG TGGTGCCGAT TGGCGGCGAG
CCGGAAGCGG TCAACGTGCG GATCATCAGC GCCACCCACC GCAATCTGCT GGAACGGGTC
GGCGATGGCA GTTTCCGTGA AGACCTTTAC TACCGGCTCA ACGGGCTGGA AGTGGCGCTG
CCACCATTGC GCGAGCGCAG TGACAAATCG CAGCTGCTCG ATTTTCTGCT GGCCGAAGAG
GCGGGCGGGG AAACGATTCT GATCGAAGAA CCGGCGCGCC AGGCGTTGCT GCGGTTCAAC
TGGCCGGGCA ATGTGCGGCA GTTGCGCAAT GTGCTGCGCA CGCTGGCGGC GTTGTGCGAT
GAAGGGCGGA TCGGGCTGGA TGATCTGCCC GCGATGTTTC GGCAGGTTCA GCCACTGTTG
GTAAAAGCCG ATGAAGCGTC ATCCGCACAA CCGCTGGAAG ATGCCGAGCG ACTGGCGTTG
CTCAATGCGC TGGAACACTC GCGCTGGCAC ATGACCCTCA CGGCGCAGCA ACTGGGCGTC
AGCCGCAATA CGCTATATAG AAAGCTGCGC AAGCACGGGA TCGCCCGAAC CGCCTGA
 
Protein sequence
MHDNHLSRHA QQVLTVTQGK PHLHGPGADP SIARSWLRCL EDYHLDPALT MAPTVLEHGR 
VLESRERLQQ VLQIAGNEMS SLHQQLSGAG HAVLLTDARG VILNCVTAPA ERKIFERAGL
WLGSDWSEAC EGTNGIGTCL VERQALTIHQ DEHFRGRHTG LTCSASPVFD PHGELLAVLD
VSSARPDVSR QSQFHTMALV NLSAKMIESC YFLRCFDNQW LLRFHLQAES VGLFSEGLLA
FDGEGRISAV NQSALNLLGH IRGGLLGKPV EAFFDCSLDE LLGRASANAS ASWPLRTRDG
RHLFAVLRGE TRRPLPVAPA HAPVEAPRLA GICLGDATLQ ADFRKSLRVF ERDVPLLING
ETGSGKEAFA KAVHNASQRA GKAFVALNCA AIPESLIESE LFGYRGGSFT GARKDGMRGK
LQQADGGTLF LDEIGDMPLA LQTRLLRVLE DRQVVPIGGE PEAVNVRIIS ATHRNLLERV
GDGSFREDLY YRLNGLEVAL PPLRERSDKS QLLDFLLAEE AGGETILIEE PARQALLRFN
WPGNVRQLRN VLRTLAALCD EGRIGLDDLP AMFRQVQPLL VKADEASSAQ PLEDAERLAL
LNALEHSRWH MTLTAQQLGV SRNTLYRKLR KHGIARTA