| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_4875 |
|---|
| Symbol | |
|---|
| ID | 3716234 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | - |
|---|
| Start bp | 5494102 |
|---|
| End bp | 5495766 |
|---|
| Gene Length | 1665 bp |
|---|
| Protein Length | 554 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | |
|---|
| Product | putative ABC transporter ATP-binding protein |
|---|
| Protein accession | YP_350603 |
|---|
| Protein GI | 77461096 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.54223 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCAAT ACGTCTTCAC CATGCATCGG CTGGGCAAAG TTGTTCCGCC GAAGCGGGAA
ATCCTGAAAA ACATTTCGCT GTCTTTCTTC CCCGGCGCCA AGATCGGCGT ACTCGGCCTC
AACGGTTCGG GTAAATCCAC CCTGCTGAAA ATCATGGCCG GCGTCGACAC CGAGTTCGAA
GGCGAAGCGC GCCCGATGCC GGACCTGAAC ATCGGTTACC TGCCGCAAGA GCCACAGCTG
GATCCGACCA AGACCGTGCG CGAAGTGGTC GAGGAAGCGG TCAGCGTGAT CAAGGATGCG
CAAGCGCGTC TGGATGAGGT CTACGCCGCT TACGCCGACC CGGACGCCGA CTTCGACAAG
CTGGCCGCCG AACAGGCCAA GCTCGAAGCG ATCCTGCAGG CCAGCGACGG TCACAACCTG
GAGCGCCAGC TGGAAGTTGC CGCCGATGCG CTGCGTCTGC CGGCCTGGGA CGCCAGGGTC
GAACACCTGT CCGGTGGTGA AAAGCGTCGT GTGGCCCTGT GCCGTCTGCT GCTGTCCGCC
CCGGACATGC TGCTGCTCGA CGAACCGACC AACCACCTGG ACGCCGACTC CGTTGCCTGG
CTCGAACACT TCCTGCACGA CTTCCCGGGC ACTGTGGTAG CGATCACGCA CGACCGTTAC
TTCCTGGACA ACGTTGCCGG CTGGATTCTG GAACTCGACC GCGGCGCGGG CATTCCTTAC
GAGGGCAACT ACTCGGGTTG GCTGGAAGCC AAGTCCGATC GTCTGGCCCA GGAATCCAAG
CAGCAATCGG CTCACGAAAA AGCCATGAAG GAAGAGCTGG AGTGGGTGCG CAAAGGCGCC
AAGGCCCGCC AGTCGAAATC CAAGGCTCGT CTGCAACGCT TCGAAGAAAT GCAGTCGCAG
GAATTCCAGA AGCGTTCGGA AACCAACGAG ATCTACATCC CGGCCGGTCC ACGCCTGGGC
GACAAGGTCA TCGAATTCAA GAACGTCACC AAGGGCTACG GCGATCGCGT CCTGATCGAC
AACCTGTCGT TCTCCATGCC GAAGGGCGCC ATCGTCGGCG TGATCGGCGG TAACGGTGCC
GGTAAGTCGA CCCTGTTCCG CATGCTGATG GGCAAGGAAA CCCCGGATTC CGGGAGCATC
GAGATCGGCG AAACCGTGCA ACTGGCCTGC GTTGACCAGA GCCGCGAAGA CCTGGACGGC
AGCAAGACCG TGTTCCAGCA GATCTCCGAT GGTTCCGACC AGATCCGCAT CGGCAACTAC
GAGATCCCGT CGCGTACCTA CGTCGGTCGC TTCAACTTCA AGGGCGGCGA TCAGCAGAAG
TTCGTCAAGG ACCTGTCCGG TGGTGAGCGC GGTCGTCTGC ACCTGGCGCT GACCCTGAAG
GAGGGCGGCA ACGTCCTGCT GCTCGACGAA CCGTCCAACG ACCTCGACGT TGAAACCCTG
CGTTCCCTGG AAGAAGCCCT GCTGGACTTC CCGGGCGCCG CCATTGTGAT CTCTCACGAT
CGGTGGTTCC TTGACCGCGT CGCGACTCAC ATCCTGGCGT ACGAAGACGA CTCGCAAGCA
GTGTTCTTCG AGGGCAACTA CACCGAGTAC GAAGCCGATC GCAAAAAGCG CCTCGGCGAA
GCAGCGGCCC AGCCACACCG GGTACGCCAC AAGAAACTGG CCTGA
|
|---|
| Protein sequence | MAQYVFTMHR LGKVVPPKRE ILKNISLSFF PGAKIGVLGL NGSGKSTLLK IMAGVDTEFE
GEARPMPDLN IGYLPQEPQL DPTKTVREVV EEAVSVIKDA QARLDEVYAA YADPDADFDK
LAAEQAKLEA ILQASDGHNL ERQLEVAADA LRLPAWDARV EHLSGGEKRR VALCRLLLSA
PDMLLLDEPT NHLDADSVAW LEHFLHDFPG TVVAITHDRY FLDNVAGWIL ELDRGAGIPY
EGNYSGWLEA KSDRLAQESK QQSAHEKAMK EELEWVRKGA KARQSKSKAR LQRFEEMQSQ
EFQKRSETNE IYIPAGPRLG DKVIEFKNVT KGYGDRVLID NLSFSMPKGA IVGVIGGNGA
GKSTLFRMLM GKETPDSGSI EIGETVQLAC VDQSREDLDG SKTVFQQISD GSDQIRIGNY
EIPSRTYVGR FNFKGGDQQK FVKDLSGGER GRLHLALTLK EGGNVLLLDE PSNDLDVETL
RSLEEALLDF PGAAIVISHD RWFLDRVATH ILAYEDDSQA VFFEGNYTEY EADRKKRLGE
AAAQPHRVRH KKLA
|
|---|
| |