Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pfl01_4619 |
Symbol | secD |
ID | 3713638 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas fluorescens Pf0-1 |
Kingdom | Bacteria |
Replicon accession | NC_007492 |
Strand | - |
Start bp | 5217219 |
End bp | 5219090 |
Gene Length | 1872 bp |
Protein Length | 623 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | |
Product | preprotein translocase subunit SecD |
Protein accession | YP_350347 |
Protein GI | 77460840 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.655295 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGAACA AATATCCTCT GTGGAAATAC ATTCTGATCC TGGCGGTGCT GGCGATCGGT CTGATTTATT CCGCTCCGAA TCTATACCCC GATGACCCGG CCATTCAGAT CAGCGGCGCC AGCACGGCCC TGCAGGTCAA TCAGGCCGAT CTGGATCGCG TGAGCACCGC GCTCAAGGAA TCCGGGATCA ACGTCAAGGC TTCGAGCCTG GCTGCGAACG GCAAGGGCGG TCTGATCCGT CTGACCAAGG CTGAAGACCA GCTGCCGGCA AAAGACGTTG TTCGCAAGGC ATTGGGTGAT GACTACGTCG TCGCGCTGAA CCTGGCACAA ACCACCCCGC AATGGTTGCG CAACCTGGCT GCGCATCCGA TGAAGCTGGG TCTGGACTTG TCCGGTGGTG TGCACTTCCT GCTGGAAGTG GACATGGACA AAGCCCTCGA CGCCCGCCTG AAAGTCTACG AAGGCGACGT CAAGAGCCTG CTGCGCAAAG AGAAGCTGCG TTATCGCAGC CTGCCGCAAC TCAATGGCGC CATTCAGCTG GGCTTCAGCG ATGCTGATTC CCGCGAACAG GCCCGTGCGC TGATCCGCAA GAATTTCAAC GATTTCGACA TTGTTCCGGC CGACCTCAAC GGTCAACCGG TGCTGCGTCT GGCGATGACC CCGGCCAAGC TGGCGGAAAT CCGTGAATAC TCCATCAAGC AGAACCTGAC CACGGTCCGT AACCGCGTCA ACGAGCTGGG TGTTGCCGAA CCGATCGTCC AGCGTCAGGG TGCCAACCGT ATCGTGGTTG AGCTGCCGGG CGTGCAGGAC ACTGCCGAAG CCAAGCGTAT CCTCGGCAAG ACGGCCAACC TGGAGTTCCG TCTGGCTGCA GAGCCGGGCG CTTCGAAAGC CACTTCCGAG ACCTTCGAAT TCCGTGAAGG CAAGCGTCCT CCTGCGCAGA TCGAGCGTGG TCTGATCATC ACCGGTGACC AGGTGACTGA CGCCAAGGCC GGTTTCGATT CGCAGCACGG TACGCCTGAA GTGAACATCC GCCTGGATGG TCACGGTGGT GATCTGATGA ACCGCGCGAC CCGCAGCAAC GTCGGTCGCA GCATGGCGGT GATCTTCATC GAACAGCGCC CGGTCACTAC TTACGTCAAG CAAGTGGTCG ACGGCGTCGA AAAAGACGTG CCGGTGCAGA CCTTCAAGGA AGAGAAGAAA ATCATCAGCC TGGCGACCAT TCAGTCGCCG CTGGGTGCGC AGTTCCGTAT CACCGGCCTG AACGGCCAGG GCGAGTCGTC CGAACTGGCG CTGTTGCTGC GTGCCGGTGG TCTGGCTGCT CCGATGTACT TTGCTGAAGA ACGCACCATC GGCCCGAGCC TGGGTGCGGA CAACATCACC AAGGGTATCG ATGCATCGCT GTGGGGCATG TTGTTCGTCT CGCTGTTCAT CATCGCCATC TACCGCTTCT TCGGCCTGAT CGCCACCGTT GCACTGGCGG TGAACATGGT GTTGCTGCTG GCGCTGATGT CGCTGCTGGG TGCTACGCTG ACCCTGCCGG GTATCGCCGG TATCGTGTTG ACCATGGGTA TGGCGGTCGA CGCCAACGTG CTGATCTTCT CGCGGATTCG TGAAGAGATC GCCGCCGGCA TGACCGTGCA ACGTGCAATC AACGAAGGCT TCGGCCGGGC ATTCACTGCG ATTCTCGACG CCAACCTGAC CACCTTGCTG GTCGGCGGCA TCCTCTTCGC CATGGGCACA GGCCCGGTGA AAGGCTTTGC AGTGACCATG TCCCTCGGGA TCTTTACCTC GATGTTCACG GCCATCATGG TGACCCGCGC AATGGTCAAC CTGATCTTTG GCGGACGTGA CTTCAAGAAG TTGTGGATTT AA
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Protein sequence | MLNKYPLWKY ILILAVLAIG LIYSAPNLYP DDPAIQISGA STALQVNQAD LDRVSTALKE SGINVKASSL AANGKGGLIR LTKAEDQLPA KDVVRKALGD DYVVALNLAQ TTPQWLRNLA AHPMKLGLDL SGGVHFLLEV DMDKALDARL KVYEGDVKSL LRKEKLRYRS LPQLNGAIQL GFSDADSREQ ARALIRKNFN DFDIVPADLN GQPVLRLAMT PAKLAEIREY SIKQNLTTVR NRVNELGVAE PIVQRQGANR IVVELPGVQD TAEAKRILGK TANLEFRLAA EPGASKATSE TFEFREGKRP PAQIERGLII TGDQVTDAKA GFDSQHGTPE VNIRLDGHGG DLMNRATRSN VGRSMAVIFI EQRPVTTYVK QVVDGVEKDV PVQTFKEEKK IISLATIQSP LGAQFRITGL NGQGESSELA LLLRAGGLAA PMYFAEERTI GPSLGADNIT KGIDASLWGM LFVSLFIIAI YRFFGLIATV ALAVNMVLLL ALMSLLGATL TLPGIAGIVL TMGMAVDANV LIFSRIREEI AAGMTVQRAI NEGFGRAFTA ILDANLTTLL VGGILFAMGT GPVKGFAVTM SLGIFTSMFT AIMVTRAMVN LIFGGRDFKK LWI
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