Gene Pfl01_4619 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPfl01_4619 
SymbolsecD 
ID3713638 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas fluorescens Pf0-1 
KingdomBacteria 
Replicon accessionNC_007492 
Strand
Start bp5217219 
End bp5219090 
Gene Length1872 bp 
Protein Length623 aa 
Translation table11 
GC content60% 
IMG OID 
Productpreprotein translocase subunit SecD 
Protein accessionYP_350347 
Protein GI77460840 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.655295 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGAACA AATATCCTCT GTGGAAATAC ATTCTGATCC TGGCGGTGCT GGCGATCGGT 
CTGATTTATT CCGCTCCGAA TCTATACCCC GATGACCCGG CCATTCAGAT CAGCGGCGCC
AGCACGGCCC TGCAGGTCAA TCAGGCCGAT CTGGATCGCG TGAGCACCGC GCTCAAGGAA
TCCGGGATCA ACGTCAAGGC TTCGAGCCTG GCTGCGAACG GCAAGGGCGG TCTGATCCGT
CTGACCAAGG CTGAAGACCA GCTGCCGGCA AAAGACGTTG TTCGCAAGGC ATTGGGTGAT
GACTACGTCG TCGCGCTGAA CCTGGCACAA ACCACCCCGC AATGGTTGCG CAACCTGGCT
GCGCATCCGA TGAAGCTGGG TCTGGACTTG TCCGGTGGTG TGCACTTCCT GCTGGAAGTG
GACATGGACA AAGCCCTCGA CGCCCGCCTG AAAGTCTACG AAGGCGACGT CAAGAGCCTG
CTGCGCAAAG AGAAGCTGCG TTATCGCAGC CTGCCGCAAC TCAATGGCGC CATTCAGCTG
GGCTTCAGCG ATGCTGATTC CCGCGAACAG GCCCGTGCGC TGATCCGCAA GAATTTCAAC
GATTTCGACA TTGTTCCGGC CGACCTCAAC GGTCAACCGG TGCTGCGTCT GGCGATGACC
CCGGCCAAGC TGGCGGAAAT CCGTGAATAC TCCATCAAGC AGAACCTGAC CACGGTCCGT
AACCGCGTCA ACGAGCTGGG TGTTGCCGAA CCGATCGTCC AGCGTCAGGG TGCCAACCGT
ATCGTGGTTG AGCTGCCGGG CGTGCAGGAC ACTGCCGAAG CCAAGCGTAT CCTCGGCAAG
ACGGCCAACC TGGAGTTCCG TCTGGCTGCA GAGCCGGGCG CTTCGAAAGC CACTTCCGAG
ACCTTCGAAT TCCGTGAAGG CAAGCGTCCT CCTGCGCAGA TCGAGCGTGG TCTGATCATC
ACCGGTGACC AGGTGACTGA CGCCAAGGCC GGTTTCGATT CGCAGCACGG TACGCCTGAA
GTGAACATCC GCCTGGATGG TCACGGTGGT GATCTGATGA ACCGCGCGAC CCGCAGCAAC
GTCGGTCGCA GCATGGCGGT GATCTTCATC GAACAGCGCC CGGTCACTAC TTACGTCAAG
CAAGTGGTCG ACGGCGTCGA AAAAGACGTG CCGGTGCAGA CCTTCAAGGA AGAGAAGAAA
ATCATCAGCC TGGCGACCAT TCAGTCGCCG CTGGGTGCGC AGTTCCGTAT CACCGGCCTG
AACGGCCAGG GCGAGTCGTC CGAACTGGCG CTGTTGCTGC GTGCCGGTGG TCTGGCTGCT
CCGATGTACT TTGCTGAAGA ACGCACCATC GGCCCGAGCC TGGGTGCGGA CAACATCACC
AAGGGTATCG ATGCATCGCT GTGGGGCATG TTGTTCGTCT CGCTGTTCAT CATCGCCATC
TACCGCTTCT TCGGCCTGAT CGCCACCGTT GCACTGGCGG TGAACATGGT GTTGCTGCTG
GCGCTGATGT CGCTGCTGGG TGCTACGCTG ACCCTGCCGG GTATCGCCGG TATCGTGTTG
ACCATGGGTA TGGCGGTCGA CGCCAACGTG CTGATCTTCT CGCGGATTCG TGAAGAGATC
GCCGCCGGCA TGACCGTGCA ACGTGCAATC AACGAAGGCT TCGGCCGGGC ATTCACTGCG
ATTCTCGACG CCAACCTGAC CACCTTGCTG GTCGGCGGCA TCCTCTTCGC CATGGGCACA
GGCCCGGTGA AAGGCTTTGC AGTGACCATG TCCCTCGGGA TCTTTACCTC GATGTTCACG
GCCATCATGG TGACCCGCGC AATGGTCAAC CTGATCTTTG GCGGACGTGA CTTCAAGAAG
TTGTGGATTT AA
 
Protein sequence
MLNKYPLWKY ILILAVLAIG LIYSAPNLYP DDPAIQISGA STALQVNQAD LDRVSTALKE 
SGINVKASSL AANGKGGLIR LTKAEDQLPA KDVVRKALGD DYVVALNLAQ TTPQWLRNLA
AHPMKLGLDL SGGVHFLLEV DMDKALDARL KVYEGDVKSL LRKEKLRYRS LPQLNGAIQL
GFSDADSREQ ARALIRKNFN DFDIVPADLN GQPVLRLAMT PAKLAEIREY SIKQNLTTVR
NRVNELGVAE PIVQRQGANR IVVELPGVQD TAEAKRILGK TANLEFRLAA EPGASKATSE
TFEFREGKRP PAQIERGLII TGDQVTDAKA GFDSQHGTPE VNIRLDGHGG DLMNRATRSN
VGRSMAVIFI EQRPVTTYVK QVVDGVEKDV PVQTFKEEKK IISLATIQSP LGAQFRITGL
NGQGESSELA LLLRAGGLAA PMYFAEERTI GPSLGADNIT KGIDASLWGM LFVSLFIIAI
YRFFGLIATV ALAVNMVLLL ALMSLLGATL TLPGIAGIVL TMGMAVDANV LIFSRIREEI
AAGMTVQRAI NEGFGRAFTA ILDANLTTLL VGGILFAMGT GPVKGFAVTM SLGIFTSMFT
AIMVTRAMVN LIFGGRDFKK LWI