Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pfl01_4513 |
Symbol | |
ID | 3717772 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas fluorescens Pf0-1 |
Kingdom | Bacteria |
Replicon accession | NC_007492 |
Strand | + |
Start bp | 5088734 |
End bp | 5089372 |
Gene Length | 639 bp |
Protein Length | 212 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | |
Product | DNA-(apurinic or apyrimidinic site) lyase / endonuclease III |
Protein accession | YP_350241 |
Protein GI | 77460734 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00739094 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAATGCCG CAAAACGTCT GGAGATTTTC CGCAGGCTTC ACGAGGACAA CCCCGAGCCC AAGACCGAAC TGGCCTACTC CTCGCCCTTC GAACTATTGA TTGCGGTGAT TCTGTCCGCG CAATCCACGG ACGTCGGGGT GAACAAGGCG ACGGCGAAGC TGTTTCCGGT GGCGAACACA CCGGCGGCCA TTCACGCCTT GGGCGTCGAA GGGTTGTCCG AGTACATCAA GACTATCGGC CTCTATAACA GCAAGGCCAA AAACGTGATC GAGACCTGCC GCCTGCTGGT CGAATTACAC AACGGGGAAG TCCCGCAGAC GCGTGAAGAA CTGGAAGCCT TGCCCGGCGT TGGCCGCAAG ACCGCCAACG TCGTGCTCAA CACCGCGTTC CGCCAGTTGA CCATGGCCGT GGACACCCAC ATCTTCCGGG TCAGCAACCG CACCGGCATT GCACCGGGTA AAAATGTGGT CGAGGTGGAA AAGAAGCTGA TGAAGTTTGT GCCAAAAGAA TACCTGCTCG ACTCGCACCA CTGGCTCATT CTTCACGGAC GCTATGTGTG TCTGGCACGC AAACCCCGTT GTGGCAGCTG TCGGATTGAA GATCTGTGCG ATTACAAGCA CAAAACTTCT GACGATTGA
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Protein sequence | MNAAKRLEIF RRLHEDNPEP KTELAYSSPF ELLIAVILSA QSTDVGVNKA TAKLFPVANT PAAIHALGVE GLSEYIKTIG LYNSKAKNVI ETCRLLVELH NGEVPQTREE LEALPGVGRK TANVVLNTAF RQLTMAVDTH IFRVSNRTGI APGKNVVEVE KKLMKFVPKE YLLDSHHWLI LHGRYVCLAR KPRCGSCRIE DLCDYKHKTS DD
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