| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_4218 |
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| Symbol | rumA |
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| ID | 3717718 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas fluorescens Pf0-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007492 |
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| Strand | - |
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| Start bp | 4760738 |
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| End bp | 4762123 |
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| Gene Length | 1386 bp |
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| Protein Length | 461 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_349946 |
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| Protein GI | 77460439 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.076322 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.149124 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCCAAGC ACGAGAGAGG CCTGCGCTTC CAGCCCACCG GCGGCAGCAA GGCCCCGCAA
ATCCCGACCG GCAAAAAGCA GCGCCTGAGC ATCGAGCGCC TGGCCAATGA CGGTCGCGGC
ATCGCGTTTT TTGAAGGCAA AACCTGGTTC GTCCTCGGCG CCCTCGCCGG TGAAGAGGTC
GAAGCGCGGG TGCTAGGCGC CCACGGCAAA GTGGTCGAGG CGCGTACCGA GCGCGTGTTC
AGCGCCAGTG AATTGCGTCG TCCCGCACCT TGCCAGCACG CCGGCCGCTG CGGCGGTTGC
AGCGTCCAGC ATTTGCCCCA CAACGAACAG CTTGCCCTGA AACAGCGCAT GCTCGCCGAG
CAGTTGTCGC GAGTCGCCGG AGCCGAACCC GAGGAGTGGG CGGCGCCGTT GACCGGTCCC
GAATTCGGCT ACCGTCGCCG CGCCCGGATC GCCGTGCGCT GGGACAGCAA GGCCAAAAAG
CTTGAAGTCG GTTTCCGTGC CGCCGGCAGC CAGGACATCG TTGCGATCAG CGAATGCCCG
GTGCTGGTAC AGCCCTTGCA GCCGATCATG ACCCGCTTGC CGGAGATGCT GCGTCGCTTG
AGCAAACCTC AGGCGCTGGG GCATGTGGAA TTGTTCAGTG GCTCGTCACT CGCCGTCCTG
CTGCGTCACA TGGCGCCGCT GTCCGAAGCC GACCTGACGA TTCTCAAGGA TTTCTGCGCG
TTCCATGAAG CGCAGCTCTG GCTGCATGGC GAAGGCGAAC CGCAGCCGGT GGATGATGCA
CAGTCGCTTG GCTATCACCT GGAACAGTGG GATCTGCAAT TGGCTTACCG GCCGGGGGAT
TTCATCCAGG TCAATGCCGG GGTCAACGAG GCCATGGTCG CCCAGGCGCT GGAGTGGTTG
AAACCGACAG CGGATGAGCG CGTGCTCGAC CTGTTCTGCG GTCTCGGCAA CTTTGCCTTG
CCGCTGGCAA AAGCTGCGCG TGAAGTGGTG GCGGTCGAAG GCGTGCAGAC CATGGTTGAT
CGCGCGGCGG CCAATGCCGC CAGTAACAAT TTGCATAACA CAAAGTTTTT TCAGGCCGAT
TTATCCCAGC CTTTGACCGA TGCCGAGTGG ATCGGAAACG GCTTTTCTGC GGTACTCTTG
GACCCACCGC GCGACGGTGC TTTCGAGGTG GTGCGCAAGC TGGCGGCCTT GGGCGCCAAA
CGGTTGGTGT ACGTGTCGTG CAACCCTGCA ACTCTGGCGC GCGATACGGT CGAATTGATC
AAGCAGGGCT ACCGGTTAAA ACGTGCCGGG ATTCTCGATA TGTTTCCTCA GACGGCACAT
GTCGAGGCCA TGGCGTTATT TGAAGCGAGC CAGGATGGCT CGTCTGATCC GACTGGTCGT
CCGTAG
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| Protein sequence | MAKHERGLRF QPTGGSKAPQ IPTGKKQRLS IERLANDGRG IAFFEGKTWF VLGALAGEEV
EARVLGAHGK VVEARTERVF SASELRRPAP CQHAGRCGGC SVQHLPHNEQ LALKQRMLAE
QLSRVAGAEP EEWAAPLTGP EFGYRRRARI AVRWDSKAKK LEVGFRAAGS QDIVAISECP
VLVQPLQPIM TRLPEMLRRL SKPQALGHVE LFSGSSLAVL LRHMAPLSEA DLTILKDFCA
FHEAQLWLHG EGEPQPVDDA QSLGYHLEQW DLQLAYRPGD FIQVNAGVNE AMVAQALEWL
KPTADERVLD LFCGLGNFAL PLAKAAREVV AVEGVQTMVD RAAANAASNN LHNTKFFQAD
LSQPLTDAEW IGNGFSAVLL DPPRDGAFEV VRKLAALGAK RLVYVSCNPA TLARDTVELI
KQGYRLKRAG ILDMFPQTAH VEAMALFEAS QDGSSDPTGR P
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