| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_4072 |
|---|
| Symbol | rpsA |
|---|
| ID | 3714895 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | - |
|---|
| Start bp | 4599589 |
|---|
| End bp | 4601274 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | 30S ribosomal protein S1 |
|---|
| Protein accession | YP_349800 |
|---|
| Protein GI | 77460293 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0000537264 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0653757 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAAA GCTTTGCGGA ACTCTTTGAA GAAAGCCTAA AGACCCTGAA CCTTCAGGCA
GGCTCCATCA TCACCGGTGT TATCGTTGAT ATCGATTACC AGGCTCGCTG GGTAACCGTT
CACGCTGGCC TGAAGTCCGA AGCACTGATC CCTCTGGAGC AGTTCTACAA CGACGCTGGC
GAACTGAACA TCAACGTCGG TGACGAAGTT CACGTTGCTC TGGACTCGGT TGAAGACGGT
TTCGGTGAAA CCAAGCTGTC CCGTGAAAAA GCCAAGCGCG CTGAATGCTG GATCGTTCTG
GAAGCAGCCT TCGCAGCTGA GGAAGTGGTC AAGGGCGTTA TCAACGGTAA GGTTAAAGGC
GGCTTCACTG TCGACGTTAA CGGCATCCGT GCGTTCCTGC CAGGTTCCCT GGTTGACGTC
CGTCCAGTGC GCGACACCAC GCACCTGGAA GGCAAAGAGC TGGAATTCAA GGTCATCAAA
CTGGACCAGA AGCGCAACAA CGTTGTCGTT TCCCGTCGCA GCGTCCTGGA AGCCGAGAAC
TCCGCCGAGC GTGAAGCTCT GCTGGAATCC CTGCAGGAAG GCCAGCAAGT CAAAGGTATC
GTCAAAAACC TCACCGATTA CGGCGCATTC GTCGATCTGG GTGGCGTGGA CGGCCTGCTG
CACATCACCG ACATGGCCTG GAAGCGCATC AAGCATCCTT CCGAGATCGT CAACGTTGGT
GACGAAATCG ACGTCAAGGT TCTGAAATAC GATCGCGAAC GCAACCGTGT TTCCCTGGGC
CTGAAGCAAC TGGGCGAAGA TCCATGGGTT GCTATCAAAG CCCGTTACCC AGAAGGCACT
CGCGTTACCG CTCGTGTAAC CAACCTGACC GACTACGGCT GCTTCGCTGA GCTGGAAGAA
GGCGTTGAAG GTCTGGTACA CGTTTCGGAA ATGGACTGGA CCAACAAGAA CATCCACCCT
TCGAAAGTCG TACAAGTCGG CGACGAAGTG GAAGTCATGG TTCTGGACAT CGACGAAGAG
CGTCGTCGTA TCTCCCTGGG CATCAAGCAG TGCAAGTCGA ACCCATGGGA AGACTTCTCT
GGCCAGTTCA ACAAGGGCGA CAAGATCTCC GGTACCATCA AGTCGATCAC CGATTTCGGT
ATCTTCATTG GTCTGGACGG CGGCATCGAC GGTCTGGTTC ACCTGTCCGA CATCTCCTGG
AACGAAGTGG GCGAAGAAGC CGTACGTCGT TTCAAGAAGG GCGACGAGCT GGACACCGTT
ATCCTGTCGG TTGACCCGGA GCGCGAGCGT ATCTCCCTGG GTATCAAGCA ACTGGAAAGC
GATCCGTTCT CCGAGTACGT CTCGGTTAAC GACAAAGGCG CAATCGTTAA GGGCACTGTG
AAAGAAGTTG ACGCCAAAGG CGCCATCATC GTTCTGGCCG ACGATATCGA AGCGACTCTG
AAAGCCTCCG AAATCAGCCG TGACCGCGTT GAAGACGCGC GCAACGCTCT GAAAGAAGGC
CAGGAAGTAG AAGCCAAGAT CATCAGCGTT GATCGTAAGA GCCGTCAGAT CAGCCTCTCC
ATCAAGTCGA AAGACGACGC TGAAGAGAAA GAAGCCATCC AGAGCCTGAA AGCAGCTCCG
GAAGGTGAAG CAGCTGACAC CACCATGGCG GCACTGCTGC GTCAAGCAAT GGCCAAACAG
AACTGA
|
|---|
| Protein sequence | MSESFAELFE ESLKTLNLQA GSIITGVIVD IDYQARWVTV HAGLKSEALI PLEQFYNDAG
ELNINVGDEV HVALDSVEDG FGETKLSREK AKRAECWIVL EAAFAAEEVV KGVINGKVKG
GFTVDVNGIR AFLPGSLVDV RPVRDTTHLE GKELEFKVIK LDQKRNNVVV SRRSVLEAEN
SAEREALLES LQEGQQVKGI VKNLTDYGAF VDLGGVDGLL HITDMAWKRI KHPSEIVNVG
DEIDVKVLKY DRERNRVSLG LKQLGEDPWV AIKARYPEGT RVTARVTNLT DYGCFAELEE
GVEGLVHVSE MDWTNKNIHP SKVVQVGDEV EVMVLDIDEE RRRISLGIKQ CKSNPWEDFS
GQFNKGDKIS GTIKSITDFG IFIGLDGGID GLVHLSDISW NEVGEEAVRR FKKGDELDTV
ILSVDPERER ISLGIKQLES DPFSEYVSVN DKGAIVKGTV KEVDAKGAII VLADDIEATL
KASEISRDRV EDARNALKEG QEVEAKIISV DRKSRQISLS IKSKDDAEEK EAIQSLKAAP
EGEAADTTMA ALLRQAMAKQ N
|
|---|
| |