Gene Pfl01_3887 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPfl01_3887 
Symbol 
ID3712533 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas fluorescens Pf0-1 
KingdomBacteria 
Replicon accessionNC_007492 
Strand
Start bp4396513 
End bp4397913 
Gene Length1401 bp 
Protein Length466 aa 
Translation table11 
GC content66% 
IMG OID 
Productmulti anti extrusion protein MatE 
Protein accessionYP_349615 
Protein GI77460108 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0845713 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACTGACC GCCCTGCTGC CGTTTCCCTC AACCGCCCTG CCCGGGTTCG CCTGGAGCTG 
AAGAATCTGC TCGGCCTGGC CCTGCCGATC ATGATCGCGC AGCTGGCAAC CACCGCCATG
GGCTTCGTCG ATGCGGTGAT GGCCGGGCGC GTCGGGCCCA AGGATCTGGC GGCCGTGGCG
CTGGGCAACT CGATCTGGGT GCCGGTGTTC CTGCTGATGA CCGGCACTTT GCTGGCGACC
ACGCCTAAAG TCGCCCAGCG CTTTGGCGCC GGCACCCACA GCGAGATCGG CCCGATCGTG
CGTCAGGCCC TGTGGCTGGC ACTGGTGGTG GGCCTGATGG CGACCACCAT GCTGTTCAGC
GCCGAACCGA TCCTGCATTT GATGAAAGTC GATCCGGAGC TGATCGGCCC ATGCATGCAG
TACCTGCACG GCATCGCCAG CGGTCTGCCG GCCGTGGCGT TCTACCATGT GCTGCGCTGC
ACCAGTGACG GCCTCGGTCG CACCCGCCCG GCGATGGTGC TGGGCCTGTG CGGCCTGGCG
CTGAACATTC CGCTCAACTA CGTGTTCATT TATGGCCACT TTGGCGTACC GGCCATGGGC
GGCGTCGGTT GCGGCTGGGC CACGGCGATC GTGATGTGGG TGATGGCACT GGGTCTGGCC
GGTTATGAGC GCTGGGCACC GGCCTACAAG TCGAGCGAAC TGTTCAGCCG TTTCGACTGG
CCGCAATGGG CGGTGATCAA GCGTTTGCTG GCTATCGGTC TGCCGATCGG CGTCGCGGTG
TTTGCCGAGT CGAGCATCTT CGCGGTGATC GCGCTGCTGA TCGGCAGCCT CGGCGCCACC
GTGGTGGCCG GGCACCAGAT CGCGCTGAAC GTCAGCTCGC TGGTGTTCAT GATTCCGTAC
TCGCTGGGCA TGGCCGTGAC CGTGCGGGTC GGTCAGGCCC TGGGCCGTGA AGAACCTCGC
GAAGCACGTT TCGCGGCGGG TGTCGGCATG GGCACTGCGC TGGCTTACGC CTGCCTGTCG
GCGAGCATGA TGCTGCTGAT GCGCGAGCAC ATTGCGGCGA TCTACACGTC GGATCCGATG
GTGATTCACA TCGCCGCGAT GCTGATCGTG TATTCGGCGC TGTTCCAGTT TTCCGACGCG
ATTCAGGTCA CCGCCGCCGG CGCCCTGCGC GGTTATCAGG ACACTCGCGT GACGATGATT
CTGACCCTGT TCGCCTATTG GGGCATCGGC CTGCCGGTGG GTTACGCCCT CGGCCTGACC
GACTGGCTCG GCGAGCCACG CGGCCCGAGC GGCTTGTGGG AAGGCCTGAT CGTCGGCCTG
AGCTGCGCGG CGCTGATGCT GTCGATCCGC CTGACGCGCA GTGCACGCAA ACGCATTCGC
ATCAGCCGTT CGATGGGCTG A
 
Protein sequence
MTDRPAAVSL NRPARVRLEL KNLLGLALPI MIAQLATTAM GFVDAVMAGR VGPKDLAAVA 
LGNSIWVPVF LLMTGTLLAT TPKVAQRFGA GTHSEIGPIV RQALWLALVV GLMATTMLFS
AEPILHLMKV DPELIGPCMQ YLHGIASGLP AVAFYHVLRC TSDGLGRTRP AMVLGLCGLA
LNIPLNYVFI YGHFGVPAMG GVGCGWATAI VMWVMALGLA GYERWAPAYK SSELFSRFDW
PQWAVIKRLL AIGLPIGVAV FAESSIFAVI ALLIGSLGAT VVAGHQIALN VSSLVFMIPY
SLGMAVTVRV GQALGREEPR EARFAAGVGM GTALAYACLS ASMMLLMREH IAAIYTSDPM
VIHIAAMLIV YSALFQFSDA IQVTAAGALR GYQDTRVTMI LTLFAYWGIG LPVGYALGLT
DWLGEPRGPS GLWEGLIVGL SCAALMLSIR LTRSARKRIR ISRSMG