Gene Pfl01_3844 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPfl01_3844 
Symbol 
ID3714871 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas fluorescens Pf0-1 
KingdomBacteria 
Replicon accessionNC_007492 
Strand
Start bp4345611 
End bp4347833 
Gene Length2223 bp 
Protein Length740 aa 
Translation table11 
GC content61% 
IMG OID 
Productlipopolysaccharide biosynthesis 
Protein accessionYP_349572 
Protein GI77460065 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGTTAC CGTCAGTAAT CGGCACCCGT GAAAATGATC AAGACAGTAT TGATCTTCTC 
GGCATCTTCG GCAGCCTGAT CGATCAGAAG TGGTTGATCG GTGCGTTCAC CGGCGCATTC
ATGATGACCG GTGTGGCCTA TGCGATTTTG GCCACGCCGG TGTATCTGGC CAATGCGTTG
GTGCAGGTCG AACCGAAAAA GAACGACATG CTCGGTTTTT CCGACCTCAA CAGCATGCTC
GGCGGGCAAT CGCCGTCGGT GACCGAAATC GGCATCATCA AATCCCGCGC GGTGATCGGC
AAGACAGTCG ACGACCTGCG CCTGGACATC GACGTCACCC CCAACACCTT TCCGCTGATT
GGCGGCTTTC TTTCCCGGCG TTATCGCGGC GAGACCGAAC TCAGCGTCGC GCCGCCGCGC
TTCGGCCTGA GCAGCTACGC CTGGGGCGGT GAACGCCTGG AGTTTGCCAA GCTCAATCTG
CCCAAGGAGC TGCTGGGCAA GAAACTCACC CTGATCGCCG GCGAACAACA TCGCTTCCAA
CTGCTCGACG ACAACGACAA CCTGCTGGTC GACGGTGTGG CGGGCGAAGC CTTCGCCCAG
GACGGCGTAG AAGGGCAGAT CGCGCAGCTG TTGGCCAACC CCGGGACCCG TTTCGAAGTG
GTGCGCTACC CACGAATCGT GACCATTCAG GGTTATCAGG ACGCGCTGGA CATCTCCGAG
CAAGGCAAGG AATCGGGGAT CATCCGTCTG GCCCTGGCCA GCAGCGACGC CGCCGAAGCG
GTGAAGATCC TCAACAAGAT CGCTTCGCTG TACGTCGATC AGAACGTGCG CCGCACCTCG
GCCGAAGCGG CGCAGAGCCT GGCCTTCCTG CAAAGCCAGT TGCCGCAGGT CAAACGCGAT
CTGGCCAAGG CCAGCGATGC GCTCAACGCC TATCAGACCC ACGGCAAGAC CGTGAACATC
TCGCTGGAAA CCCAATCGGT GCTCGGCCAG TCCGTGGCGC TCGAAACGCG GATTTCCGAG
CTGAAACTGC AACAGGCGGA GATGGATCGC AAGTTCACCA AACAGCACCC GGCCTACCGC
GCGCTGATGA CCCAGATTGG CGAATTGACC CAGCAACAGC GCTCGCTGGA AGGCAAGGTT
CAGGACCTGC CGGCCACGCA GCAGGAACTG CTCAACCTGA CCCGCGATGT CGAAGTCGCC
TCGCAGATCT ACACCCAGTT GCTGAACAAA TCCCAGGAGC TGGACATTAT CCGCGCCGGT
GCCGTGGGTA ACGTGCGTCT GGTGGATACG GCGGACGTCG ACCTGACCAG CCCGGTCAAA
CCGAAAAAAG CCCTGATCGT GTTGATCGCC ACCTTCCTCG GCGCCTTCGT CGGCGTGGCG
CTGGTGCTGT TGCGCAAATC CCTGAGCAAG GGCCTGGAAG GGCCGGAAGC CATCGAGCAG
CTCGGCTTGC CGGTCTACGC GTCGATTCCC TACAGCGCCC TGCAGCAGGA AGAGGACAGC
AAAAAAGTCC GGGCCAAAGT CGCGGCGGAC ACGCCGGCGT ATCTGCTGGC CCTGCGCAAC
CCGACGGACC TGTCCATCGA ATCGATCCGC AGCCTGCGCA CCTGCCTGCA CTTCGCGGCG
CTGGATTCGA CCAACAACCG CATCATGATT TCCGGCCCGA GCCCGCAGGT CGGCAAGACC
TTCGTCTCTT CCAACCTGGC GGCGGTCATG GCCCAGAGCG GGCAGCGCGT GGTGCTGATC
GACGCCGACA TGCGCAAGGG TCATCTGCAC AAGACGCTGA ACACGCCGAT CACCAACGGC
TTGTCGGATC TGCTGGTCAA GCGCTGCACC CTCGAGCAGG CGATCAACAA GGTCGAAGTC
GACAACCTGC ACTTCATCAG CCGTGGCCAG GTTCCGCCTA ACCCTTCCGA ACTGTTGATG
CACGCGAATT TCCGCGAACT GCTGGCGCAA CTCAGCGAGC GCTATGACGT GGTGATCATC
GACACGCCAC CGCTGCTGGC GGTGACCGAT GCGGCGATTG TCGGTCGCGA AGCCGGCATC
AGCCTGATTG TCGCGCGGTT CGGGGTGAAC CCGGCCAAGG AAATCGAAAT GACGATCCGG
CGTTTCGCCC AGAACGGTAT CGAGTTGAAG GGCGCGGTGT TCAACGGCGT CGAGAAGCGC
GCGGCCAGCT ATTACGGCAA CGGCAGCTAT TACAACTACG AATACGCGTC CGACCAGTCC
TGA
 
Protein sequence
MQLPSVIGTR ENDQDSIDLL GIFGSLIDQK WLIGAFTGAF MMTGVAYAIL ATPVYLANAL 
VQVEPKKNDM LGFSDLNSML GGQSPSVTEI GIIKSRAVIG KTVDDLRLDI DVTPNTFPLI
GGFLSRRYRG ETELSVAPPR FGLSSYAWGG ERLEFAKLNL PKELLGKKLT LIAGEQHRFQ
LLDDNDNLLV DGVAGEAFAQ DGVEGQIAQL LANPGTRFEV VRYPRIVTIQ GYQDALDISE
QGKESGIIRL ALASSDAAEA VKILNKIASL YVDQNVRRTS AEAAQSLAFL QSQLPQVKRD
LAKASDALNA YQTHGKTVNI SLETQSVLGQ SVALETRISE LKLQQAEMDR KFTKQHPAYR
ALMTQIGELT QQQRSLEGKV QDLPATQQEL LNLTRDVEVA SQIYTQLLNK SQELDIIRAG
AVGNVRLVDT ADVDLTSPVK PKKALIVLIA TFLGAFVGVA LVLLRKSLSK GLEGPEAIEQ
LGLPVYASIP YSALQQEEDS KKVRAKVAAD TPAYLLALRN PTDLSIESIR SLRTCLHFAA
LDSTNNRIMI SGPSPQVGKT FVSSNLAAVM AQSGQRVVLI DADMRKGHLH KTLNTPITNG
LSDLLVKRCT LEQAINKVEV DNLHFISRGQ VPPNPSELLM HANFRELLAQ LSERYDVVII
DTPPLLAVTD AAIVGREAGI SLIVARFGVN PAKEIEMTIR RFAQNGIELK GAVFNGVEKR
AASYYGNGSY YNYEYASDQS