| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_3451 |
|---|
| Symbol | |
|---|
| ID | 3713576 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | + |
|---|
| Start bp | 3936213 |
|---|
| End bp | 3937400 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | |
|---|
| Product | outer membrane porin |
|---|
| Protein accession | YP_349180 |
|---|
| Protein GI | 77459673 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.243467 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCCG ATGCCGAGGG CTTCATCGAA GACAGTAAAG CCACGCTGAA CCTGCGCAAC
GCCTACTTCA ATCGCAACTT CGTCAACCCC AACTACCCAC AGGGCAAGGC TGAAGAGTGG
ACACAGAACT TCATCCTCGA CGCCAAATCC GGTTTCACTC AGGGCACGGT CGGCTTTGGC
CTGGACGTGC TGGGCATGTA TTCGCAGAAG CTCGATGGCG GCAAAGGCAC CGGCGGTACG
CAACTGCTAC CGATCCACGA TGACGGGCGC CCGGCGGACA ATTTCGGGCG CCTGGGTGTA
GCGCTCAAGG CCAAGGTGTC GAAGACCGAA TTGAAGGTGG GTGAATGGAT GCCGGTGCTG
CCCATCCTGC GCTCGGATGA TGGTCGATCA CTGCCCCAGA CCTTTCGCGG CGGCCAGATC
ACGTCTACCG AAATCAATGG CCTGACCCTT TACGGTGGCC AGTTCCGTGG CAACAGCCCG
CGTAACGACG CGAGCATGGA AGACATGTCA ATGAACGGCC GAGGCGCATT CACCTCCGAC
CGCTTCAACT TCGGCGGCGG CGAATACACC TTCAACGATA AGCGCACGCT CGTCGGTGTG
TGGTACGCCG AACTCAGCGA CATCTACCAG CAGCAGTATT TCAACCTCAG CCACAGCCAG
CCACTGGGCG ACTGGACGCT GGGCGCCAAC CTCGGTTTCT TCACCGGCAA GGAGGACGGC
AGCGCCCAGG CCGGCGACCT CGACAACAAA ACCGCGTTCG CCATGCTTTC GGCCAGATAC
GGCGGCAACA CGTTCTACAT CGGCTTGCAA AAGCTCAGCG GCGACGATGC CTGGATGCGC
GTCAACGGCA CCAGCGGCGG CACCCTGGCC AACGACAGCT ACAACGCCAG TTACGACAAC
GCGAAGGAGC GCTCCTGGCA GATTCGCCAC GACTACAACT TCGTCGTCCT CGGCGTCCCC
GGCTTGACGT TGATGAACCG CTACATCAGC GGCGACAACG TGCACACCGG CACCATCACC
GATGGCAAGG AATGGGGTCG CGAATCGGAA CTGGCCTACA CCGTGCAGAG CGGCCCGCTG
AAGAACCTCA ACGTCAAATG GCGCAACGCG ACGATTCGCC GGGACTTCAG CACCAATGAA
TTCGACGAGA ACCGGATCTT CATCAGTTAC CCGATTTCGT TGTTGTAA
|
|---|
| Protein sequence | MSADAEGFIE DSKATLNLRN AYFNRNFVNP NYPQGKAEEW TQNFILDAKS GFTQGTVGFG
LDVLGMYSQK LDGGKGTGGT QLLPIHDDGR PADNFGRLGV ALKAKVSKTE LKVGEWMPVL
PILRSDDGRS LPQTFRGGQI TSTEINGLTL YGGQFRGNSP RNDASMEDMS MNGRGAFTSD
RFNFGGGEYT FNDKRTLVGV WYAELSDIYQ QQYFNLSHSQ PLGDWTLGAN LGFFTGKEDG
SAQAGDLDNK TAFAMLSARY GGNTFYIGLQ KLSGDDAWMR VNGTSGGTLA NDSYNASYDN
AKERSWQIRH DYNFVVLGVP GLTLMNRYIS GDNVHTGTIT DGKEWGRESE LAYTVQSGPL
KNLNVKWRNA TIRRDFSTNE FDENRIFISY PISLL
|
|---|
| |