Gene Pfl01_3400 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPfl01_3400 
Symbol 
ID3713388 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas fluorescens Pf0-1 
KingdomBacteria 
Replicon accessionNC_007492 
Strand
Start bp3876988 
End bp3877956 
Gene Length969 bp 
Protein Length322 aa 
Translation table11 
GC content65% 
IMG OID 
Product2-hydroxyacid dehydrogenase 
Protein accessionYP_349129 
Protein GI77459622 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGCCA CCGTTCTGGT ACTGGTTGAA ACCATCAATG ACTATTTGCC GATCCTCGAA 
CGTCAGGGTT TTCACCTGAT TCTCGCGCCG ACCCCAGCCG AACGCGCGCA AGCCATCGCC
ACCCACGGGG CGCGGATCGA CGCGGTACTG ACCCGTGGCC CGCTGGGCTT ATATGCTGAA
GAAATCGCGG CCTTGCCCGC GCTGAAAATC ATCTGCGTGA TCGGCGCCGG TTACGAGCAG
GTCGACCTGC AGGCCGCCAG TGACCGTGGG CTGACCGTGA CCAACGGCGC CGGCGTCAAC
GCTTCGTCGG TGGCCGACCA CGCCATGGCG ATGCTGCTGG CGCTGGTGCG CGACATCCCG
CGCTGCGATG GGGCGGTGCG TCGGGGCGAG TGGCCGAAGA TCATGCGCCC GTCGCTGGCC
GGCAAGCGCC TGGGCATTCT CGGTCTGGGC GCGGTGGGGA TGGCGATTGC CAAACGCGCG
GGCCTGGGCT TCGACATGGA GATCAGCTAC CACAACCGTC AGGTGCGCAG CGACGTGCCT
TACGCGTTCT GCTCGACCCC GACCGAACTG GCCCGGGCCT CGGATTTTCT GGTAGTCGCC
ACGCCCGGCG GCATCGGCAG CCAGCATCTG GTGACCCGCC CGGTGCTCGA TGCTTTGGGT
CCCAACGGTT TTATCGTCAA CATTGCCCGC GCCAGCGTGA TCGCCACCGC CGATCTGATC
AGCGCGCTGG AACAACGGCG AATTGCCGGC GCAGCGCTGG ATGTGTTCGA TCACGAGCCG
CAAGTACCCG ATGCGCTGAA GAGCCTGAGC AATGTGCTTC TCACCCCGCA CGTCGCCGGG
CTGTCACCGG AAGCCACTCA AGGCACCGTG GAGCTGGTGG GCAAGAATCT GGTGGCGTTC
TTCTCCGGGC AACCGGTGCT GACGCCGCTG CAGTTGCCGC CGAAACTGAA CAACCAGCGC
GTGCACTAA
 
Protein sequence
MPATVLVLVE TINDYLPILE RQGFHLILAP TPAERAQAIA THGARIDAVL TRGPLGLYAE 
EIAALPALKI ICVIGAGYEQ VDLQAASDRG LTVTNGAGVN ASSVADHAMA MLLALVRDIP
RCDGAVRRGE WPKIMRPSLA GKRLGILGLG AVGMAIAKRA GLGFDMEISY HNRQVRSDVP
YAFCSTPTEL ARASDFLVVA TPGGIGSQHL VTRPVLDALG PNGFIVNIAR ASVIATADLI
SALEQRRIAG AALDVFDHEP QVPDALKSLS NVLLTPHVAG LSPEATQGTV ELVGKNLVAF
FSGQPVLTPL QLPPKLNNQR VH