| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_2916 |
|---|
| Symbol | |
|---|
| ID | 3712680 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | + |
|---|
| Start bp | 3361284 |
|---|
| End bp | 3362165 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | |
|---|
| Product | RarD protein |
|---|
| Protein accession | YP_348647 |
|---|
| Protein GI | 77459141 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.861039 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.688785 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTCTAAAG GCATTGCTCT ATCGGTGACA GCATCGACGC TGTTTGCCGT CATGTATTAC
TACACCTCGC TGCTCACCCC TTTGAGCGGC GTGGAAATCT TCGGTTGGCG GATGCTGCTG
ACCGTGCCCT GCATGACCGT GTTCATGCTG GTTTCCGGCG AATGGCGGCG GGTGCTGGAG
CTGCTGCGCG GGCTCCCTGC ACTGCCGAAG TTGATCGGTG GTCTGATCCT CTCGTCAGCG
TTGCTCGGCG TGCAGTTGTG GCTGTTCATG TGGGCGCCGC TCAACGGCTA CAGCCTCGAT
GTGTCGCTGG GCTACTTCCT GCTACCGTTG TCCATGGTCC TGACCGGACG CATCGCTTAT
GGCGAAAACC TGTCATACCT GCAAAAAGTC GCGGTGTTTT TTGCCAGCCT CGGTGTGTTG
AACGAGTTGT ATCAGGTCGG CGGGTTTTCC TGGGCGACGC TGGTGGTGGT CGTCGGTTAC
CCGCTGTACT TCGTGCTGCG CAAATACCTC AAGACCGACA ACCTCGGCGG TTTGTGGGTC
GACATGACCC TGATGCTGCC GGTGGCGTAC TGGTTTGTGC GCGGCGGCGA ACAGGGTTTC
GGCGTGTTCG ATCAGTACCC GGCGCTGACA TGGCTGATTC CGTTGCTCGG TCTGATCAGT
GCATCGGCGC TGGTGGTGTA CATCATTGCC AGTCGCCTTC TGCCGTTCAG TCTGTTCGGT
TTGTTGAGTT ACGTAGAGCC AGTGTTGTTG CTCGGCGTGG CGCTGCTGCT GGGTGAGAGC
ATCAAGCCCG GAGAATGGCT GACCTACATC CCGATCTGGC TCGCCGTGGT GGTGCTGGTG
TTTGAAGGCT TCAAGCATCT GATGCGCCAA CGGCGCCCGT AA
|
|---|
| Protein sequence | MSKGIALSVT ASTLFAVMYY YTSLLTPLSG VEIFGWRMLL TVPCMTVFML VSGEWRRVLE
LLRGLPALPK LIGGLILSSA LLGVQLWLFM WAPLNGYSLD VSLGYFLLPL SMVLTGRIAY
GENLSYLQKV AVFFASLGVL NELYQVGGFS WATLVVVVGY PLYFVLRKYL KTDNLGGLWV
DMTLMLPVAY WFVRGGEQGF GVFDQYPALT WLIPLLGLIS ASALVVYIIA SRLLPFSLFG
LLSYVEPVLL LGVALLLGES IKPGEWLTYI PIWLAVVVLV FEGFKHLMRQ RRP
|
|---|
| |