| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_2893 |
|---|
| Symbol | |
|---|
| ID | 3712657 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | + |
|---|
| Start bp | 3332839 |
|---|
| End bp | 3333996 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_348624 |
|---|
| Protein GI | 77459118 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.127871 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.371656 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAAGA ATCTGCTGGC CGGGCTCGGC CTGATCGCAT TGGCGCTGAC GCTGAGTGCC
TGTGATAAAT CCTCGAACGC CGAGGAACAG GCGCCGCCGG CCACCGTGCG GATCGAAACC
CTTGAGGCGC GCCCCCTGTC GATCAGCAGC GAACTGAGCG GGCGGATTGC CGCCCCGCGC
ATCGCCGAAG TCCGCGCCCG GGTCGCCGGC GTAGTGCTGC AACGCACCTA CCGCGAAGGC
AGCGACGTGA AAAAGGGCGA CGTGCTGTTC CGTATCGATC CGGCGCCGTT CAAGGCTGAC
CTCGATAGCG CCGAAGCGGC CCTGCGCAAG GCCGAGGCAA ACGCGTTCCA GGCAAAACTT
CAGGAACAGC GCTACGCCCA GTTGATCGAC GACAAGGCCA TCAGCGCTCA GGATTACGAC
AACGCCCGCG CCAACGCCCG GCAGACCGCC GCCGATGTTG CCGCCAACAA GGCAGCCGTC
GAGCGGGCGA AGCTGAACCT CGGTTACGCC ACCGTCACCG CGCCGATTTC CGGGCGCGTC
GGGCGTGCCC TGGTGACTGA AGGTGCGCTG GTCGGCCAGA ACGAAACCAC GCCCATGGCG
CTGATCCAGC AGCTGAACCC GATCCACGCC GACCTCACCC AGTCGACCCG CGAACTCAAC
GAGTTGCGCA GGGCATTCCG TTCCGGCCAG TTGCAGCAGG TCGGCCAGGA TCAGGTCAAG
GCCACGCTGA TCCAGGACGA TGGCAGCCTC TATCCGCTGC CGGGCAAATT GCTGTTCAGC
GATATCACGG TCGATCCGGG CACCGGACAA ATCATTTTGC GCAGCGAGTT CCCCAATCCG
GATCTCGATC TGTTGCCGGG CAGCTACGTT CGCGTGCGTC TGGAGCAAGG CGTGATCCAG
CATGGCCTGA CCGTGCCACA ACGCGCGGTA CAACGTGACA GCGCCGGTGT GGCGCAGGTC
CTGACGGTCG ACGACCAGAT GCGCGTTGCC CAGCAGCCAG TGCAGCTCGG CGCGGTACAG
AACGACCGCT GGATCGTCAC CGGCGGCCTC AAGGCCGGCG ACCGCATTGT CATCGAAGGC
CTGCAACACG CCCGTCCGGG CGAAGTGGTG CAGATCGACG ACACCCCTCT TCCACTTGCC
CAGACCTCTG GTCAGTAA
|
|---|
| Protein sequence | MSKNLLAGLG LIALALTLSA CDKSSNAEEQ APPATVRIET LEARPLSISS ELSGRIAAPR
IAEVRARVAG VVLQRTYREG SDVKKGDVLF RIDPAPFKAD LDSAEAALRK AEANAFQAKL
QEQRYAQLID DKAISAQDYD NARANARQTA ADVAANKAAV ERAKLNLGYA TVTAPISGRV
GRALVTEGAL VGQNETTPMA LIQQLNPIHA DLTQSTRELN ELRRAFRSGQ LQQVGQDQVK
ATLIQDDGSL YPLPGKLLFS DITVDPGTGQ IILRSEFPNP DLDLLPGSYV RVRLEQGVIQ
HGLTVPQRAV QRDSAGVAQV LTVDDQMRVA QQPVQLGAVQ NDRWIVTGGL KAGDRIVIEG
LQHARPGEVV QIDDTPLPLA QTSGQ
|
|---|
| |