Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pfl01_2709 |
Symbol | |
ID | 3714404 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas fluorescens Pf0-1 |
Kingdom | Bacteria |
Replicon accession | NC_007492 |
Strand | - |
Start bp | 3120580 |
End bp | 3123201 |
Gene Length | 2622 bp |
Protein Length | 873 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_348440 |
Protein GI | 77458934 |
COG category | |
COG ID | |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.602276 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGACATCT CCAGCCGTGC GACGTCGTTA CCCACCCTGC AGGGCTCTGT CACCCGGCGT CTGGCCGTCG CGGTGGGTGC GCTGTTCATT GCCGGAGTGA TGGCGGCGAC CGCTGCGTTG CTCGGCATTG CCACTCAACT GGATGAGGAT GACGTCAATG ACGTCCGGTT CTATTCGGCC CGGGCGCTGG AGAACCGAAT CACGGCATCG AAGAACTACA TCACTAGTTA CGCCTACTGG ACGACAGCCT ATGAGCGTTT GAGCGGTACG GTCGACACGA ACTGGGCCTA CACCGAGCAG AACATGGGCA AGACCCTGTT TACCAGCGAC GGCTATGACG GTCTGTTCGT GCTGGATCGA GAACGCACCA AATACGCCGT CGTTCGCGGG CAAATGCTCG ATGCGCAACT GCCCCAGTTC CTTCAGCTTT CGGCGAACAG TCTGGTGGAG CAAGTGCAGA GTCAGCCCGA CCTGACCAAG CCCGTCAGTA CTTATTCATT GTTCGAAGAC TGGCCGGCGC TGGTCACCGC GGCGGCGATC CTTCCCAACG ATGAGCGCCC GGTAGGCGAT CCACAAAAGA CTTCGGTACT GGTATTCGTC GACAATCTGA CACCCACCAA GTTGCGCAAG ATCGGCAGCG GGTACGGGCT GAACAATCTG TCGCTGGCAC CGGACGGCAC CATCGACCCG GGCCAGCCTC GCGTCCCGCT GGACAGCACC GGATACAGCC TCGTTGCCGA TCTGGAGCGA CCGGGCCGGC ATCTGCTCTG GTCGTTGCTG CCAACGCTCG GCCCCGCTTT GCTCGTGTTG ATGGCCCTGA CGGTCTGGTT CTTTCGCCAT GCGCTACGTT CCTCGCGGTA TGTCGACGAC AGTTTTGAAG CGATGCAGGC GTCGAATCAG GCATTGCTGG CGTCCAACCG CGCACTGGAA GCCAGCGAGG AGCGCTTTCG GGCGGTGGCC GAAGCGGCGT CCGACTGGAT CTGGGAGGTG GATGAAGCGT TGTCCATCAC CTATCTGTCG ACCCGGTTCA GTGCTGTCAC CGGTTATCCG CAGGCCCAGT GGATCGGGAA ACACATCGGA CACTTGCTTG TCTGCGACAC CACTCCGCTG GATCTGTGGC TGAAGAAACT CGATGAGGAA AGCAACGCCA GCGACCTGCG TTGCACCTAC CGTGACCGCG AGGGGCAACA GCGCCACTGC CGTCTCTCGG CCAGGCCGAT CGTGGAAAGT ACGGCAGTGG TCGGCTATCG CGGCACGGCC AGCGACATCA CCGATGAGGT CGCCGCCCAT GCGCAGATCC AGCACCTGTC CTTGCATGAC GCGCTGACGG GCCTGCCCAA CCGCAACAAA CTGTCGCGCT ATCTGGACGA CGCTCTGCTG CTCAAGGAGC ACGCCCCGCC TTTATCGGTG CTGATGATTG ACCTGGACAA TTTCAAGCCG ATCAACGATT CGCTCGGGCA CCCCGCCGGC GATGCTGTGT TGCAAGAGGT TGCCGGCCGA CTGCGCGAAT GCACGCGCGA CCACGATATC GTCGCCCGTC TGGGCGGTGA CGAGTTCGTC GTGGTGCTCT GCGGCATGGA CACGCATCAG GAGATCGACA GGTTCTGCAC ACGCCTGATC GGCAGCCTGC ATCAACCCAT CCTCTTCGAA CAGCAACCGT TGCACATCGG CGCCAGTGTC GGCATCGCTC TGAGCCGGCG TCACGGGTAC GTCGCCAGTG AGCTGATCCG TTGCGCAGAC ATTGCGCTGT ACCAGGCCAA ATCCGAAGGC AAAAACACCT GGTGCTATTT CGAAGCGCAC ATGAGCGATC AGATCCAAAC CCGTCGGCAG ATGGAGGACG ACCTTCGAAG GGCCCTGACG AACAATGAGT TCGTGCTGCA CTTTCAACCC CGATACAAGG TCGATGGCAA GGAAATCGTT TCGGTCGAGG CTCTGGTGCG CTGGCAGCAT CCGGTAAAAG GGTTGCTCGG ACCGGATTTA TTCATTCCGC TGGCCGAACA GACCGACCTG ATTGTTCCCC TCGGTCGCTG GGTCCTGCGT GAGGCTTGTG AAACGGCACT GACCTGGCCG GCGGATATTC TCCTGTCGGT CAACCTGTCA CCTGCGCAGT TTGCGATCAG CGATGTGGTC GAAGATGTAC GCGAAGTGCT GGTGGGTACT CGCTTCCCGG CCAGCCGGCT GGAGCTGGAA ATCACCGAGA ACGTAATGCT CAACGACACG GACGGCGCGT TGACCACCAT GACCGCGCTC AAGGAACTGG GCGTGCGCCT GAACATGGAT GACTTCGGCA CCGGTTATTC CTCCCTTGGC TATCTGCGTG CCTACCCGTT CGATGGCATC AAGATCGACA AACGTTTCAT TGCTTCAATC AGCACCGGCG CCAATGATCG GGCGGTGGTG CAGGCCATCA TCGGACTGGG TAAAGCGATG GGGCTGACCG TGACCGCTGA AGGCGTTGAA ACCGAGGAAC AACTGGACAT TCTGGGCAAG GATCAATGCA ACGAAGTCCA GGGTTATTAC ATGAGTCGCC CGATCGACAG GGCGGCCTTC GCCAGTCTTT TGCAGGCATC AAGAGCCGCC GCTGTCGATC CTTCCAGGCA ACGAAAAGGC CGGGTGACCT GA
|
Protein sequence | MDISSRATSL PTLQGSVTRR LAVAVGALFI AGVMAATAAL LGIATQLDED DVNDVRFYSA RALENRITAS KNYITSYAYW TTAYERLSGT VDTNWAYTEQ NMGKTLFTSD GYDGLFVLDR ERTKYAVVRG QMLDAQLPQF LQLSANSLVE QVQSQPDLTK PVSTYSLFED WPALVTAAAI LPNDERPVGD PQKTSVLVFV DNLTPTKLRK IGSGYGLNNL SLAPDGTIDP GQPRVPLDST GYSLVADLER PGRHLLWSLL PTLGPALLVL MALTVWFFRH ALRSSRYVDD SFEAMQASNQ ALLASNRALE ASEERFRAVA EAASDWIWEV DEALSITYLS TRFSAVTGYP QAQWIGKHIG HLLVCDTTPL DLWLKKLDEE SNASDLRCTY RDREGQQRHC RLSARPIVES TAVVGYRGTA SDITDEVAAH AQIQHLSLHD ALTGLPNRNK LSRYLDDALL LKEHAPPLSV LMIDLDNFKP INDSLGHPAG DAVLQEVAGR LRECTRDHDI VARLGGDEFV VVLCGMDTHQ EIDRFCTRLI GSLHQPILFE QQPLHIGASV GIALSRRHGY VASELIRCAD IALYQAKSEG KNTWCYFEAH MSDQIQTRRQ MEDDLRRALT NNEFVLHFQP RYKVDGKEIV SVEALVRWQH PVKGLLGPDL FIPLAEQTDL IVPLGRWVLR EACETALTWP ADILLSVNLS PAQFAISDVV EDVREVLVGT RFPASRLELE ITENVMLNDT DGALTTMTAL KELGVRLNMD DFGTGYSSLG YLRAYPFDGI KIDKRFIASI STGANDRAVV QAIIGLGKAM GLTVTAEGVE TEEQLDILGK DQCNEVQGYY MSRPIDRAAF ASLLQASRAA AVDPSRQRKG RVT
|
| |