| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_2698 |
|---|
| Symbol | |
|---|
| ID | 3714393 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | + |
|---|
| Start bp | 3107514 |
|---|
| End bp | 3109976 |
|---|
| Gene Length | 2463 bp |
|---|
| Protein Length | 820 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | |
|---|
| Product | formate dehydrogenase alpha subunit |
|---|
| Protein accession | YP_348429 |
|---|
| Protein GI | 77458923 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0271863 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCAAGTC TTGCCCCGAC GTACGGCCGT GGAGCCATGA CCAACACCTG GACCGATATC
GCCAATGCGA ATCTGATCCT GGTGATGGGC GGCAACGCAG CAGAAGCCCA CCCTTGTGGC
TTCAAATGGG TGACCGAAGC CAAGGCGCAC AACGCCGCGC GGCTGATTGT GGTCGATCCG
AGGTTTACCC GGACCGCATC CGTGGCCGAT TACTACGCGC CGATTCGCAC CGGCAGCGAC
ATCGCGTTCA TGGGCGGGCT GATCAATTAC CTGCTGACCG AGGACAAGAT CCAGCACGAA
TACGTGCGCA ACTACACCGA CGTATCGTTC ATTGTCAGAG CCGGATTCGG CTTCGAGGAC
GGGCTGTTCA CCGGTTACGA CGCGGCCAAG CGCAGCTACA CCGACAAATC CACCTGGGGT
TACGAACTGG GCGAGGACGG CTTCGTCAAA GTCGACCCGA CCCTGCAGGA CCCGCGCTGC
GTCTATCAAC TGATGAAGCA GCATTACAGC CGCTACAACA TCGACCTGGC GAGCCAGATC
TGCGGCATGC CGGTCGATGC GATGAAAAAG ATCTGGGAGG AAATCGCCAC TTGCTCGGCG
CCGGGCAAGA CCATGACGAT TCTTTATGCA CTGGGCTGGA CCCAGCACTC GATCGGCTCG
CAGATCATTC GCAGCGCGGC GATGGTGCAA CTGCTGCTGG GTAACGTCGG CATGCCCGGC
GGCGGGGTCA ATGCTTTGCG CGGGCACTCG AACATTCAGG GCCTGACCGA CCTTGGTCTG
CTGTCCAACG CGCTGCCGGG TTACCTGACC TTGCCGACCG ACGCCGAGCA GGATTACGCG
GCCTTCATCC ATAAACGCAC GCAAGTCCCG CTGCGGCCGG GGCAATTGTC CTACTGGCAG
AACTACAGCA AATTCCACGT CAGCCTGATG AAAGCCTGGT ACGGCGCCAA TGCCACCGCC
GAGAATCAGT GGGCCTACCA CTACTTGCCG AAACTCGACA TCCCCAACTA CGACATCCTC
AAGGTGTTCG ACCTGATGGG GCAGGGCAAG GTCAACGGCT ACATGTGTCA GGGCTTCAAC
CCGATTGCCG CGCTGCCGGA CAAGAACCGG GTGATGGCGG CACTGGCCAA ACTGAAATGG
CTGGTGGTGA TGGACCCGCT GGCCACCGAA ACTTCGCAGT TCTGGGAACA CGTCGGGCCA
TTCAACGATG TGAAGAGCGC CGACATCCAG ACCGAAGTCA TCCGCCTGCC AACCACCTGT
TTTGCCGAAG AGGACGGCTC GCTGGTCAAC AGCAGCCGCT GGCTGCAATG GCATTGGAAA
GGCGCCGACG GCCCCGGCGA GGCGCGCACC GACGTGCAAA TCATGAGTGC GCTGTTCCTG
CGTCTGCGTG AGCGATATCA GGCGGAGGGC GGCAAATTCG CCGACCCGCT GTTGAAACTG
TCGTGGCCGT ACAAGATCGC CGAAGAACCC TCGCCGGAAG AGATCGCCAA AGAGGTCAAC
GGCTACGCCA CCACCGATTT CACCGACGCC ACGGGTGCGG CGATCAAGGG CAATTCGCAA
CTGGCCGGGT TCGCCCAGCT CAAGGATGAC GGCAGTACCG CGTCCGGCTG CTGGATTTTC
TGCGGCAGCT GGACCGAAGC CGGCAACCAG ATGGCCCGCC GCGACAACAA CGACCCTTAC
GGCATGCATC AGCATCAAGG CTGGGCATGG GCCTGGCCGG CCAACCGGCG GATTCTCTAT
AACCGCGCTT CGGCGGACGT CGCCGGCAAG CCGTGGGATC CGAAAAAGCG CCTGGTCTGG
TGGAACGGCA AGGCCTGGGG CGGCACCGAT GTGCCGGATT ACAAGGCCGA CGTGCCGCCG
GAAGCCGGGA TGAACCCGTT CATCATGAAC CCCGAAGGCG TGGCGCGGTT CTTCGCCGTC
GACAAGATGA ACGAAGGGCC ATTTCCCGAG CATTACGAGC CGTTCGAAAC GCCGATCGGC
ATCAACCCGC TGCACCCGGA CAACAAGAAA GCCACCAGCA ACCCGGCGGC ACGGATCTTC
GATTCGGTGT GGGACAGCCT CGGCGTGGCC AAGGATTACC CGTACGCCGC CACCAGCTAC
CGGTTGACCG AGCACTTCCA CTTCTGGAGC AAGCACTGCA AGTTGAACGC GATTGCTCAA
CCCGAGCAAT TCGTGGAAAT CGGCGAGGTG TTGGCCAAAG AGAAAGGCAT CGTCGCCGGG
GATCGGGTTC GCGTGAGCAG CAAGCGCGGG TTCATTGAAG CGGTGGCGGT GGTGACCAAA
AGGATCCGGC CGTTGCAGGT CAACAACCAG GTGGTGCACC AGATCGGCAT TCCGCTGCAC
TGGGGCTTCA CCGGCCTGAC GCGCCACGGT TACCTGACCA ACACCCTGGT GCCGTTTCTC
GGCGATGGCA ATACACAGAC CCCGGAATCC AAGTCATTCC TGGTCAACGT GGAGAAGCTC
TGA
|
|---|
| Protein sequence | MASLAPTYGR GAMTNTWTDI ANANLILVMG GNAAEAHPCG FKWVTEAKAH NAARLIVVDP
RFTRTASVAD YYAPIRTGSD IAFMGGLINY LLTEDKIQHE YVRNYTDVSF IVRAGFGFED
GLFTGYDAAK RSYTDKSTWG YELGEDGFVK VDPTLQDPRC VYQLMKQHYS RYNIDLASQI
CGMPVDAMKK IWEEIATCSA PGKTMTILYA LGWTQHSIGS QIIRSAAMVQ LLLGNVGMPG
GGVNALRGHS NIQGLTDLGL LSNALPGYLT LPTDAEQDYA AFIHKRTQVP LRPGQLSYWQ
NYSKFHVSLM KAWYGANATA ENQWAYHYLP KLDIPNYDIL KVFDLMGQGK VNGYMCQGFN
PIAALPDKNR VMAALAKLKW LVVMDPLATE TSQFWEHVGP FNDVKSADIQ TEVIRLPTTC
FAEEDGSLVN SSRWLQWHWK GADGPGEART DVQIMSALFL RLRERYQAEG GKFADPLLKL
SWPYKIAEEP SPEEIAKEVN GYATTDFTDA TGAAIKGNSQ LAGFAQLKDD GSTASGCWIF
CGSWTEAGNQ MARRDNNDPY GMHQHQGWAW AWPANRRILY NRASADVAGK PWDPKKRLVW
WNGKAWGGTD VPDYKADVPP EAGMNPFIMN PEGVARFFAV DKMNEGPFPE HYEPFETPIG
INPLHPDNKK ATSNPAARIF DSVWDSLGVA KDYPYAATSY RLTEHFHFWS KHCKLNAIAQ
PEQFVEIGEV LAKEKGIVAG DRVRVSSKRG FIEAVAVVTK RIRPLQVNNQ VVHQIGIPLH
WGFTGLTRHG YLTNTLVPFL GDGNTQTPES KSFLVNVEKL
|
|---|
| |