| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_2548 |
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| Symbol | |
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| ID | 3714091 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas fluorescens Pf0-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007492 |
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| Strand | - |
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| Start bp | 2917479 |
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| End bp | 2919281 |
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| Gene Length | 1803 bp |
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| Protein Length | 600 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | |
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| Product | Alpha amylase, catalytic region |
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| Protein accession | YP_348279 |
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| Protein GI | 77458773 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGTCAC GGACACCTGA GAGCTGGCCC CACGGCGCGA TCATGCTGGA TGCCGAGCAC
ACCCAATTCG CGTTGTGGGC GCCGGATGCG TTTTACGTCA GCGTCGAGCT GGACAACGGC
CAGTCCCTGC CGATGCTGCC GCAGGGCGAT GGCTGGTTTG TCATCAAGAC CCGCTGCCCT
GCCGGCAGCC GCTACCGTTT CAACATCGAT GGCGAACTGG AGGTGCCCGA CCCGGCCTCC
AGGGCGCAGG ACGGTGACCT CGACCGCCAC AGCGTGGTGG TCGATCCGCA CCTCTATTCC
TGGCGCAACA CGACCTGGCA AGGGCGCCCC TGGAATGAAG CGGTCATTTA TGAACTGCAT
GTCGGCGCGC TCGGCGGATT TGCCGAAGTC GAGCAGCATC TCTCACGCCT CGCGGAGCTC
GGCATCACCG CCATCGAACT GATGCCGATC GCGCAGTTTC CCGGCGATCG CAACTGGGGC
TACGACGGCG TGTTGCATTA CGCGCCACAA GCCAGCTACG GCACGCCGGA ACAACTCAAA
CATCTGATCG ACAGCGCCCA CGGTTATGGT CTGGCGGTGA TTCTTGATGT GGTCTACAAC
CACTTCGGCC CCGACGGCAA TTACCTGCAC CGCTACGCCA AGGGCTTTTT CCGCGAAGAC
AAACACACGC CGTGGGGCGC GGCCATCGAC TTCCGTCGTC GCGAAGTGCG GGACTTCTTC
GTCGAAAACG CGTTGATGTG GCTACTGGAA TACCGTTTCG ACGGCCTGCG CCTGGATGCG
GTGCACGCCA TTCAAAGCCC GGATTTTCTG CCTGAACTTG CCCGTCGCAT ACGTCAGCAG
ATCGACCCGT CCCGGCATGT GTGGCTGACC ATCGAAAACG AACTCAACCA ATCCAGCCTG
CTTGAGGAAA ATTACGACGC GCAGTGGAAC GACGATGGCC ACAACGCCCT GCATGTATTA
CTGACCGGTG AAACCGACGC CTACTACGCG GACTATGCAC TGCAACCCAC CGAACAACTG
GCCCGCTGTC TGAGCCAGGG TTTCGTGTTT CAGGGTCATA TCACCCGCCA CGGGGAGCTC
CGTGGCGAGC CAAGCGAGCA TCTGCCATCC ACAGCCTTCG TGCTGTTCCT GCAGAATCAC
GACCAGATCG GCAATCGCGC CTTCGGCGAG CGCCTGCATC AATTAGCCGA GCCGCGCGCG
GTGGACGCTG CGACAGCGTT GTTGTTGCTG TCGCCGATGA TTCCCCTGAT GTTCATGGGC
GATGAATACG CGGCCCAACA GCCATTCCTT TTCTTCACCA GCCACCATGG CGAACTGGCG
AAACTGGTGC GCGAAGGTCG GCGCAATGAG TTCGCGGCGT TCAGTGCCTT CTCGGATCCG
CACAAGCGTG AACAAATTCC CGACCCCAAC GCCGAGCAGA CCTTTCACGC CTCACAACCT
CGCCTGACGG GTAACGGCAC GCCTCGGCAA CAGGCGACGC TGGCGTTGTA TCGCCAGCTT
CTGCAACTGC GCCATCAATA CATCATTCCC AACCTGTCCG GCACTCAAGC CCTCGGCGCC
CAGGTGCTGG GGCCTGGCGC CGTCAGTGCG CGCTGGCGGC TGGGCGATGG CAGCGAGCTG
CGAATCGACC TGAACCTCAG CGATACGCCA GTGGTCAACC TTCCACAGGC TGATTCGGCG
TGGCTGTTTC GTCAGCCATC CGACGCTGGC CTGTCGGATG AGGGGCAACT GCCCCCGTAT
TGCGCGCTCG TCAGCCTCAC GGCCGCAACC CCTTTGCCCC CCTTGGATGG AGAGCGCCTA
TGA
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| Protein sequence | MPSRTPESWP HGAIMLDAEH TQFALWAPDA FYVSVELDNG QSLPMLPQGD GWFVIKTRCP
AGSRYRFNID GELEVPDPAS RAQDGDLDRH SVVVDPHLYS WRNTTWQGRP WNEAVIYELH
VGALGGFAEV EQHLSRLAEL GITAIELMPI AQFPGDRNWG YDGVLHYAPQ ASYGTPEQLK
HLIDSAHGYG LAVILDVVYN HFGPDGNYLH RYAKGFFRED KHTPWGAAID FRRREVRDFF
VENALMWLLE YRFDGLRLDA VHAIQSPDFL PELARRIRQQ IDPSRHVWLT IENELNQSSL
LEENYDAQWN DDGHNALHVL LTGETDAYYA DYALQPTEQL ARCLSQGFVF QGHITRHGEL
RGEPSEHLPS TAFVLFLQNH DQIGNRAFGE RLHQLAEPRA VDAATALLLL SPMIPLMFMG
DEYAAQQPFL FFTSHHGELA KLVREGRRNE FAAFSAFSDP HKREQIPDPN AEQTFHASQP
RLTGNGTPRQ QATLALYRQL LQLRHQYIIP NLSGTQALGA QVLGPGAVSA RWRLGDGSEL
RIDLNLSDTP VVNLPQADSA WLFRQPSDAG LSDEGQLPPY CALVSLTAAT PLPPLDGERL
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