Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pfl01_2535 |
Symbol | |
ID | 3712108 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas fluorescens Pf0-1 |
Kingdom | Bacteria |
Replicon accession | NC_007492 |
Strand | + |
Start bp | 2898035 |
End bp | 2901376 |
Gene Length | 3342 bp |
Protein Length | 1113 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | |
Product | Alpha amylase, catalytic region |
Protein accession | YP_348266 |
Protein GI | 77458760 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.592261 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGAAGA AACCCAAGGC AGCCACCTTC ATCAAGGACC CGCTCTGGTA CAAGGACGCG GTCATCTATC AAGTTCACGT CAAATCCTTT TTCGATTCGA ATAACGACGG AATCGGCGAC TTTCCCGGCC TGATCGCCAA ACTCGATTAC ATAGCCGATC TTGGCGTCAA CACCATCTGG CTGTTGCCGT TCTACCCCTC GCCACGCCGC GACGACGGTT ACGACATCGC CGAGTACCGA GGCGTGCACA GCGATTACGG AACGATGGCC GACGCCAAGC GTTTCATTGC CGAGGCGCAT AAACGCGGGT TGAGGGTCAT CACCGAGCTG GTCATCAACC ACACGTCCGA TCAGCACCCG TGGTTTCAGC GCGCGCGCAA GGCCAAGCCC GGTTCGGCCG CGCGGGACTT CTATGTGTGG TCGGATGACG ACCAGAAATA CGACGGCACC CGGATCATTT TTCTCGACAC CGAAAAGTCC AACTGGACCT GGGATCCGGT GGCCGGTCAG TACTTCTGGC ACCGCTTCTA TTCGCACCAG CCGGATCTCA ACTTCGATAA CCCGCAAGTC ATGAAAGCCG TGCTGTCGGT CATGCGCTAC TGGCTGGACA TGGGCATCGA CGGCCTGCGA CTGGATGCGA TTCCGTACCT GATCGAACGC GACGGCACCA ACAACGAAAA CCTCCCGGAA ACCCACGACG TCCTCAAGCA GATCCGTGCC GAGATCGACG CCAACTACCC CGATCGCATG CTGCTGGCCG AAGCCAATCA ATGGCCGGAA GACACCCAGC TGTACTTCGG CGACACCGAC GCCGAGGGCG TGAATGGTGA CGAGTGTCAC ATGGCGTTCC ACTTCCCGTT GATGCCGCGC ATGTACATGG CGCTGGCCCA GGAAGATCGC TTCCCGATCA CCGACATCCT GCGTCAGACC CCGGAAATCC CGGCCAACTG CCAATGGGCG ATTTTCCTGC GCAACCACGA TGAGCTGACG CTGGAGATGG TGACCGACAA GGAGCGCGAC TACCTGTGGA ACTACTACGC CGCTGACCGT CGTGCGCGGA TCAACCTTGG CATCCGCCGC CGTCTGGCGC CGTTGATGGA GCGTGACCGC CGCCGCATCG AGCTGCTGAA CAGTCTGCTG TTGTCGATGC CCGGCACGCC GACCCTGTAT TACGGCGATG AAATCGGCAT GGGCGACAAC ATCTACCTCG GCGACCGCGA CGGTGTACGC ACGCCGATGC AATGGTCGAT CGACCGCAAC GGCGGTTTCT CCCGCGCCGA TCCAGCCAGT CTGGTACTGC CGCCGATCAT GGACCCGCAA TACGGTTATC AATCGGTCAA CGTCGAAACC CAGGCCGGTG ACCCGCATTC GCTGCTGAAC TGGACTCGCC GCCTGCTGGC GGTGCGCAAG CAATCCAAGG CATTCGGGCG CGGCACGCTG AAAATGCTTT CGCCAGCCAA CCGCCGGGTG CTGGCCTACA CCCGTGAATA CACCGGGCCG GACGGCAAGC ACGAAATCAT TCTGTGCGTG GCCAACGTGT CACGCAGTGC TCAGGCAGTG GAGCTCGACC TGTCGGCCTA CGTTGGCATG GTGCCGGTGG AGATGCTCGG CGGTAACGCC TTCCCGCCCA TCGGCCAGTT GAGTTTCCTG CTGACCCTGC CGCCTTACGG TTTTTACTGG TTCGGCCTGG CGGCGGAAAA CCAGATGCCG AGCTGGCACG TCGAACCGGC GCAGAGCCTG CCGGACTTCA CCACGCTGGT ACTGAAAAAA CGCATGGAAG AGCTGCTCGA AGCGCCGTCC CGGGCCACCC TCGAGCAGGC GATTCTGCCG AGCTGGCTGC AGAACCGCCG CTGGTTCGCC GGCAAGGATG CTGATATCGA ACAGGTGAAA CTGGCCTACG GCGTGCGCTT CGGCGATGCA CAGCATCCGG TGCTGTTCAG CGAAATCGAA GTGCAGAGCG GCGGGCAGAC CAGTCGTTAT CAATTGCCGT TCGGCTTTAT TTCGGAAGAT CAGGTCGGGC CGGCGTTGCC GCAACAACTG GCTTTGGCGC GGGTACGCCG GGTGCGTCAG GTCGGGTTGA TTACCGATGC CTTCAGTCTT GAAGCGTTTA TTCGCGCTGT GCTGCAAGGC ATGCAGGGCG GCACGGTGCT CGAATCCATT GAGGGCGAGA TCCGTTTCGA GGCAACGCCG CAACTGGAAA AACTTGGCCT GGGCGCAGAG TCCGAAGTGC GCTATCTGTC CGCCGAGCAA TCCAACAGTT CGGTGGTGAT CGGCAACAGT CTGGTGCTCA AGCTGATCCG CAAAGTCGCT TCTGGCGTAC ACCCGGAACT GGAGATGAGC GCTTACCTGA CCGCTGCTGG ATTTGCCAAT ATCTCTCCGC TGCTGGGCTC GGTGATTCGC CGCGACGGGA AGGGCGAGGA CAACTTGCTG ATGATTGCGC AGGGCTATCT GAGCAATCAG GGCGACGCCT GGGAATGGAC GCAGAACAAC CTCGAACGGG CGCTGCGCGA CGAGCTGGCC GACGCCGTGT CCGAGCAGGC GCAGCACTAC AACGCCTTGG GTGAACTGAA GGATTTCGCC GGGATGCTCG GCCAGCGTCT GGGGGAAATG CATCAGGTGC TGGCAGCGCC GAGCGACAAC CAGGACTTCG CGCCGCAAGT CAGTTCGGCC AAGGATGCGC AGGCGACGGG TAAGGATGTC GCGGCGCAGG TCGAGCATGC CCTGAAGCTG CTCAAACAGC ATCAGGGCGA GCTCGATGCG GCGGATCAGA AGCTGGTCGG TCGGCTACTC GACCACAAGA AAGCCATCCT TGCCCACGTG CAGGAACTGG CCAAGCAATC CGCCGGCGGT CTACGGATTC GTGTGCACGG CGACCTGCAT TTGGGACAGG TGCTGGTAAT CAAGGGCGAT GCCTACCTGA TCGACTTCGA GGGCGAACCG GCGCGGCCAC TGGCCGAGCG CCGTGGCAAG CACAGTCCGT ACAAGGACGT CAGCGGAGTG CTGCGCTCCT TCGACTATGC CGCCGCGATG GCGCTGAATG TACACAACGT CGACAACAGC CCCGAGGCCG AAGCCGCGCG TCGGCGGGTC ACGGAGCGTT ACCTGCGTGA AGCCCGGGAA GCATTTCTCC AGGCATATCG CCAAGCGGCA GCTAGTCTTG ATCATGCCTG GCAAGATCCT GAAGGTGCCG ACGCCGCACT GGCGTTGTTC GGTCTGGAGA AAGCGGCCTA CGAAGTGGCC TATGAAGCCG AAAATCGCCC CACCTGGCTG CCCGTGCCGC TGCACGGTCT GTATGGGTTA TTGACGGGGC TCAAACCCTT TTCCGATCTT GGTGGAGAGT AG
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Protein sequence | MAKKPKAATF IKDPLWYKDA VIYQVHVKSF FDSNNDGIGD FPGLIAKLDY IADLGVNTIW LLPFYPSPRR DDGYDIAEYR GVHSDYGTMA DAKRFIAEAH KRGLRVITEL VINHTSDQHP WFQRARKAKP GSAARDFYVW SDDDQKYDGT RIIFLDTEKS NWTWDPVAGQ YFWHRFYSHQ PDLNFDNPQV MKAVLSVMRY WLDMGIDGLR LDAIPYLIER DGTNNENLPE THDVLKQIRA EIDANYPDRM LLAEANQWPE DTQLYFGDTD AEGVNGDECH MAFHFPLMPR MYMALAQEDR FPITDILRQT PEIPANCQWA IFLRNHDELT LEMVTDKERD YLWNYYAADR RARINLGIRR RLAPLMERDR RRIELLNSLL LSMPGTPTLY YGDEIGMGDN IYLGDRDGVR TPMQWSIDRN GGFSRADPAS LVLPPIMDPQ YGYQSVNVET QAGDPHSLLN WTRRLLAVRK QSKAFGRGTL KMLSPANRRV LAYTREYTGP DGKHEIILCV ANVSRSAQAV ELDLSAYVGM VPVEMLGGNA FPPIGQLSFL LTLPPYGFYW FGLAAENQMP SWHVEPAQSL PDFTTLVLKK RMEELLEAPS RATLEQAILP SWLQNRRWFA GKDADIEQVK LAYGVRFGDA QHPVLFSEIE VQSGGQTSRY QLPFGFISED QVGPALPQQL ALARVRRVRQ VGLITDAFSL EAFIRAVLQG MQGGTVLESI EGEIRFEATP QLEKLGLGAE SEVRYLSAEQ SNSSVVIGNS LVLKLIRKVA SGVHPELEMS AYLTAAGFAN ISPLLGSVIR RDGKGEDNLL MIAQGYLSNQ GDAWEWTQNN LERALRDELA DAVSEQAQHY NALGELKDFA GMLGQRLGEM HQVLAAPSDN QDFAPQVSSA KDAQATGKDV AAQVEHALKL LKQHQGELDA ADQKLVGRLL DHKKAILAHV QELAKQSAGG LRIRVHGDLH LGQVLVIKGD AYLIDFEGEP ARPLAERRGK HSPYKDVSGV LRSFDYAAAM ALNVHNVDNS PEAEAARRRV TERYLREARE AFLQAYRQAA ASLDHAWQDP EGADAALALF GLEKAAYEVA YEAENRPTWL PVPLHGLYGL LTGLKPFSDL GGE
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