Gene Pfl01_2535 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPfl01_2535 
Symbol 
ID3712108 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas fluorescens Pf0-1 
KingdomBacteria 
Replicon accessionNC_007492 
Strand
Start bp2898035 
End bp2901376 
Gene Length3342 bp 
Protein Length1113 aa 
Translation table11 
GC content61% 
IMG OID 
ProductAlpha amylase, catalytic region 
Protein accessionYP_348266 
Protein GI77458760 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.592261 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGAAGA AACCCAAGGC AGCCACCTTC ATCAAGGACC CGCTCTGGTA CAAGGACGCG 
GTCATCTATC AAGTTCACGT CAAATCCTTT TTCGATTCGA ATAACGACGG AATCGGCGAC
TTTCCCGGCC TGATCGCCAA ACTCGATTAC ATAGCCGATC TTGGCGTCAA CACCATCTGG
CTGTTGCCGT TCTACCCCTC GCCACGCCGC GACGACGGTT ACGACATCGC CGAGTACCGA
GGCGTGCACA GCGATTACGG AACGATGGCC GACGCCAAGC GTTTCATTGC CGAGGCGCAT
AAACGCGGGT TGAGGGTCAT CACCGAGCTG GTCATCAACC ACACGTCCGA TCAGCACCCG
TGGTTTCAGC GCGCGCGCAA GGCCAAGCCC GGTTCGGCCG CGCGGGACTT CTATGTGTGG
TCGGATGACG ACCAGAAATA CGACGGCACC CGGATCATTT TTCTCGACAC CGAAAAGTCC
AACTGGACCT GGGATCCGGT GGCCGGTCAG TACTTCTGGC ACCGCTTCTA TTCGCACCAG
CCGGATCTCA ACTTCGATAA CCCGCAAGTC ATGAAAGCCG TGCTGTCGGT CATGCGCTAC
TGGCTGGACA TGGGCATCGA CGGCCTGCGA CTGGATGCGA TTCCGTACCT GATCGAACGC
GACGGCACCA ACAACGAAAA CCTCCCGGAA ACCCACGACG TCCTCAAGCA GATCCGTGCC
GAGATCGACG CCAACTACCC CGATCGCATG CTGCTGGCCG AAGCCAATCA ATGGCCGGAA
GACACCCAGC TGTACTTCGG CGACACCGAC GCCGAGGGCG TGAATGGTGA CGAGTGTCAC
ATGGCGTTCC ACTTCCCGTT GATGCCGCGC ATGTACATGG CGCTGGCCCA GGAAGATCGC
TTCCCGATCA CCGACATCCT GCGTCAGACC CCGGAAATCC CGGCCAACTG CCAATGGGCG
ATTTTCCTGC GCAACCACGA TGAGCTGACG CTGGAGATGG TGACCGACAA GGAGCGCGAC
TACCTGTGGA ACTACTACGC CGCTGACCGT CGTGCGCGGA TCAACCTTGG CATCCGCCGC
CGTCTGGCGC CGTTGATGGA GCGTGACCGC CGCCGCATCG AGCTGCTGAA CAGTCTGCTG
TTGTCGATGC CCGGCACGCC GACCCTGTAT TACGGCGATG AAATCGGCAT GGGCGACAAC
ATCTACCTCG GCGACCGCGA CGGTGTACGC ACGCCGATGC AATGGTCGAT CGACCGCAAC
GGCGGTTTCT CCCGCGCCGA TCCAGCCAGT CTGGTACTGC CGCCGATCAT GGACCCGCAA
TACGGTTATC AATCGGTCAA CGTCGAAACC CAGGCCGGTG ACCCGCATTC GCTGCTGAAC
TGGACTCGCC GCCTGCTGGC GGTGCGCAAG CAATCCAAGG CATTCGGGCG CGGCACGCTG
AAAATGCTTT CGCCAGCCAA CCGCCGGGTG CTGGCCTACA CCCGTGAATA CACCGGGCCG
GACGGCAAGC ACGAAATCAT TCTGTGCGTG GCCAACGTGT CACGCAGTGC TCAGGCAGTG
GAGCTCGACC TGTCGGCCTA CGTTGGCATG GTGCCGGTGG AGATGCTCGG CGGTAACGCC
TTCCCGCCCA TCGGCCAGTT GAGTTTCCTG CTGACCCTGC CGCCTTACGG TTTTTACTGG
TTCGGCCTGG CGGCGGAAAA CCAGATGCCG AGCTGGCACG TCGAACCGGC GCAGAGCCTG
CCGGACTTCA CCACGCTGGT ACTGAAAAAA CGCATGGAAG AGCTGCTCGA AGCGCCGTCC
CGGGCCACCC TCGAGCAGGC GATTCTGCCG AGCTGGCTGC AGAACCGCCG CTGGTTCGCC
GGCAAGGATG CTGATATCGA ACAGGTGAAA CTGGCCTACG GCGTGCGCTT CGGCGATGCA
CAGCATCCGG TGCTGTTCAG CGAAATCGAA GTGCAGAGCG GCGGGCAGAC CAGTCGTTAT
CAATTGCCGT TCGGCTTTAT TTCGGAAGAT CAGGTCGGGC CGGCGTTGCC GCAACAACTG
GCTTTGGCGC GGGTACGCCG GGTGCGTCAG GTCGGGTTGA TTACCGATGC CTTCAGTCTT
GAAGCGTTTA TTCGCGCTGT GCTGCAAGGC ATGCAGGGCG GCACGGTGCT CGAATCCATT
GAGGGCGAGA TCCGTTTCGA GGCAACGCCG CAACTGGAAA AACTTGGCCT GGGCGCAGAG
TCCGAAGTGC GCTATCTGTC CGCCGAGCAA TCCAACAGTT CGGTGGTGAT CGGCAACAGT
CTGGTGCTCA AGCTGATCCG CAAAGTCGCT TCTGGCGTAC ACCCGGAACT GGAGATGAGC
GCTTACCTGA CCGCTGCTGG ATTTGCCAAT ATCTCTCCGC TGCTGGGCTC GGTGATTCGC
CGCGACGGGA AGGGCGAGGA CAACTTGCTG ATGATTGCGC AGGGCTATCT GAGCAATCAG
GGCGACGCCT GGGAATGGAC GCAGAACAAC CTCGAACGGG CGCTGCGCGA CGAGCTGGCC
GACGCCGTGT CCGAGCAGGC GCAGCACTAC AACGCCTTGG GTGAACTGAA GGATTTCGCC
GGGATGCTCG GCCAGCGTCT GGGGGAAATG CATCAGGTGC TGGCAGCGCC GAGCGACAAC
CAGGACTTCG CGCCGCAAGT CAGTTCGGCC AAGGATGCGC AGGCGACGGG TAAGGATGTC
GCGGCGCAGG TCGAGCATGC CCTGAAGCTG CTCAAACAGC ATCAGGGCGA GCTCGATGCG
GCGGATCAGA AGCTGGTCGG TCGGCTACTC GACCACAAGA AAGCCATCCT TGCCCACGTG
CAGGAACTGG CCAAGCAATC CGCCGGCGGT CTACGGATTC GTGTGCACGG CGACCTGCAT
TTGGGACAGG TGCTGGTAAT CAAGGGCGAT GCCTACCTGA TCGACTTCGA GGGCGAACCG
GCGCGGCCAC TGGCCGAGCG CCGTGGCAAG CACAGTCCGT ACAAGGACGT CAGCGGAGTG
CTGCGCTCCT TCGACTATGC CGCCGCGATG GCGCTGAATG TACACAACGT CGACAACAGC
CCCGAGGCCG AAGCCGCGCG TCGGCGGGTC ACGGAGCGTT ACCTGCGTGA AGCCCGGGAA
GCATTTCTCC AGGCATATCG CCAAGCGGCA GCTAGTCTTG ATCATGCCTG GCAAGATCCT
GAAGGTGCCG ACGCCGCACT GGCGTTGTTC GGTCTGGAGA AAGCGGCCTA CGAAGTGGCC
TATGAAGCCG AAAATCGCCC CACCTGGCTG CCCGTGCCGC TGCACGGTCT GTATGGGTTA
TTGACGGGGC TCAAACCCTT TTCCGATCTT GGTGGAGAGT AG
 
Protein sequence
MAKKPKAATF IKDPLWYKDA VIYQVHVKSF FDSNNDGIGD FPGLIAKLDY IADLGVNTIW 
LLPFYPSPRR DDGYDIAEYR GVHSDYGTMA DAKRFIAEAH KRGLRVITEL VINHTSDQHP
WFQRARKAKP GSAARDFYVW SDDDQKYDGT RIIFLDTEKS NWTWDPVAGQ YFWHRFYSHQ
PDLNFDNPQV MKAVLSVMRY WLDMGIDGLR LDAIPYLIER DGTNNENLPE THDVLKQIRA
EIDANYPDRM LLAEANQWPE DTQLYFGDTD AEGVNGDECH MAFHFPLMPR MYMALAQEDR
FPITDILRQT PEIPANCQWA IFLRNHDELT LEMVTDKERD YLWNYYAADR RARINLGIRR
RLAPLMERDR RRIELLNSLL LSMPGTPTLY YGDEIGMGDN IYLGDRDGVR TPMQWSIDRN
GGFSRADPAS LVLPPIMDPQ YGYQSVNVET QAGDPHSLLN WTRRLLAVRK QSKAFGRGTL
KMLSPANRRV LAYTREYTGP DGKHEIILCV ANVSRSAQAV ELDLSAYVGM VPVEMLGGNA
FPPIGQLSFL LTLPPYGFYW FGLAAENQMP SWHVEPAQSL PDFTTLVLKK RMEELLEAPS
RATLEQAILP SWLQNRRWFA GKDADIEQVK LAYGVRFGDA QHPVLFSEIE VQSGGQTSRY
QLPFGFISED QVGPALPQQL ALARVRRVRQ VGLITDAFSL EAFIRAVLQG MQGGTVLESI
EGEIRFEATP QLEKLGLGAE SEVRYLSAEQ SNSSVVIGNS LVLKLIRKVA SGVHPELEMS
AYLTAAGFAN ISPLLGSVIR RDGKGEDNLL MIAQGYLSNQ GDAWEWTQNN LERALRDELA
DAVSEQAQHY NALGELKDFA GMLGQRLGEM HQVLAAPSDN QDFAPQVSSA KDAQATGKDV
AAQVEHALKL LKQHQGELDA ADQKLVGRLL DHKKAILAHV QELAKQSAGG LRIRVHGDLH
LGQVLVIKGD AYLIDFEGEP ARPLAERRGK HSPYKDVSGV LRSFDYAAAM ALNVHNVDNS
PEAEAARRRV TERYLREARE AFLQAYRQAA ASLDHAWQDP EGADAALALF GLEKAAYEVA
YEAENRPTWL PVPLHGLYGL LTGLKPFSDL GGE