| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_2483 |
|---|
| Symbol | |
|---|
| ID | 3715263 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | - |
|---|
| Start bp | 2838208 |
|---|
| End bp | 2839668 |
|---|
| Gene Length | 1461 bp |
|---|
| Protein Length | 486 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | |
|---|
| Product | RND efflux system, outer membrane lipoprotein, NodT |
|---|
| Protein accession | YP_348214 |
|---|
| Protein GI | 77458708 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.183146 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCCCC TCCGCCCGAT TGCTCTTTTG GTTACCGCCG GCTTGATGTC AGGTTGCGCG
GTAGGCCCGG ATTACCATCG TCCGGACGCC CCGATTTCGG ACCATTACGT CGGCCAGTCC
GCTGTCGAAC CGCGGTCCGA ATCGACGCCG GATAATCTTG TCGCCTGGTG GAAAAACTTT
AATGATCCAC TGCTGACCGA CTTCATCAAC CAGGCGCTGC AGCAGAATCT GGACCTGGCG
CAGGCGTCAG CGCGCGTCAC CCAGGCCAGG GCCGGCCTGG GCGCCGCCAA TGCAGCACTG
CTGCCCTCGG CGAGCATCAG CGCACAGGCT GCACGCGCTT ATCAGTCCGT CGAGACACCA
CTGGGCCAGG TGTTGAATTC AACACCCGGC TACGACCGTT ACGGCAATGC CTACGAGGCC
AACCTTGAGG CAGGCTGGGA AGTAGATGTA TTTGGCGGAC TGCGCCGCGG ACGCGAGGCG
GCACTGGCCG AGTACCAGTC CTCGGCAGCG GGTTTCACCG CTACAAGGTT GGCGATCGCT
GCGCAAACGG CCGATATCTA CATCACCCTG CGCGGATTAC AGGCACGGCT GGAGATTGCC
AACCGGCAAG TCGAAACCCG GCGCGCGTTG CTGGAAAAGG TCCGGCTGCT TTACGGCAAG
GGTCTGGCCG CGGAGTATCA GGTGCGCCAG GCCGAGGGTG AGTTGTCGCA AGTCCAGGCG
ACCGTTCCGG TACTGCAAAG CGGTCTGGAG GCGGCCATGA ATGCGATGGA CGTGCTGCTC
GGCACGCCTC CCGGCACTCA CCGCACGCAA CTGGCACGTG AGGGCGAGAT TCCCGATGTG
CCGTCGCTGA ATAGGCTGGG CACTCCGGCA GATCTGCTGC GGCGCAGACC GGACCTGATC
GTCGCCGAAC GCCGCCTTGC GGCCTCCAAC GCGCGTATCG GTGAAGCGAT TGCCGAGTAC
TACCCGAAAT TTTCCCTCAG CGCCTTGCTC GGCAGCGCGA CAGCCGTCTC CGGCGGCAAT
CTTTTCACCA GTGGCGCAAG CCAGTCGGCC GGTGTCTTGG GTTTGCGCTG GCGGCTATTC
GACTTCGCAC GCATCAACGC CCGGATCGAT CAGGCCAAAG GCCAGGAATC TGAAGCATTG
GCCGCGTATC GCCAGTCAGT ACTGCGCGCC ACCGAAGATG TAGAGAACGC GCTGTCCTCA
CTGGTGAATC GGCAAACTCA GACCACCACC CTTACCGGCG GCGAAGAGGC GCTGACTCAA
GCTCGCCAGT CCTCGTTCAC CGCCTATGAA AAAGGCACCG CCAGCCTGAT CGATGTCCTG
CACGCCGACG AAACACTGTT GCAGGCCTCC GACGCCAGAG CGCAAGCGCG GACCGAATCG
GCCCGTGCGG CGGTGGCGGT ATTCAAGTCG CTCGGTGGAG GATGGCAACC CGTTGAGCCG
GGTTCTGTAG CGGCGCGCTG A
|
|---|
| Protein sequence | MPPLRPIALL VTAGLMSGCA VGPDYHRPDA PISDHYVGQS AVEPRSESTP DNLVAWWKNF
NDPLLTDFIN QALQQNLDLA QASARVTQAR AGLGAANAAL LPSASISAQA ARAYQSVETP
LGQVLNSTPG YDRYGNAYEA NLEAGWEVDV FGGLRRGREA ALAEYQSSAA GFTATRLAIA
AQTADIYITL RGLQARLEIA NRQVETRRAL LEKVRLLYGK GLAAEYQVRQ AEGELSQVQA
TVPVLQSGLE AAMNAMDVLL GTPPGTHRTQ LAREGEIPDV PSLNRLGTPA DLLRRRPDLI
VAERRLAASN ARIGEAIAEY YPKFSLSALL GSATAVSGGN LFTSGASQSA GVLGLRWRLF
DFARINARID QAKGQESEAL AAYRQSVLRA TEDVENALSS LVNRQTQTTT LTGGEEALTQ
ARQSSFTAYE KGTASLIDVL HADETLLQAS DARAQARTES ARAAVAVFKS LGGGWQPVEP
GSVAAR
|
|---|
| |