| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_2392 |
|---|
| Symbol | |
|---|
| ID | 3715444 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | - |
|---|
| Start bp | 2750740 |
|---|
| End bp | 2753124 |
|---|
| Gene Length | 2385 bp |
|---|
| Protein Length | 794 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | |
|---|
| Product | MscS mechanosensitive ion channel |
|---|
| Protein accession | YP_348124 |
|---|
| Protein GI | 77458619 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.211304 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00331512 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGTAATG CATTGAAGTC ATTGATGTTC ATCGCTTTGA TCCTGCTCGG CTCGGGGTTC
GTGGCGGTGT CGGCCGCCGA CCTGTCCGGC ACAGCGGATG TCAGCACCGG CGCCCCGCTC
CCCGGCGTCT CGCAAAGCGA TCTGCAAGCC TTGCAACTGC GCCTCGACGG ACTCAAGCAG
CAGATCTCGT CCGCCAACAA TTACAACCAG CTCGAAGGCC CGCAGGATCG GGTGCAGACG
TTCATTCTGG ACATTGATCG ACTGTCGGCG TCGCTGTTGC CGCAGCAGGC GCAACTGGCC
GTGCAACTGG GCGTACTCGG TGCCGCGCCG GCCGAAGCGG TCGCTGCCGA ACAAGCCGAT
ATCGCGGCGC AGCGGGCGAC GTTGATCGAG CAAAAAACCA AAGTCGATAC GGCGTTGAAG
AACCTCGCCA TCCTCAAGCA AAGCGCCACG GAGCTGATCA CCCAGATCGC CGGTATCCGC
CGCACCTTGC TCGAAAGCGA ACTGACGCTC AGCACCGACA GCATTCTGAA TCCCGGTTTC
TGGGCTCCCC TTGTCAATCC GTCAGCGGAC GACCGCCAGC GTCTGCGCTT TTTCGTCGAA
CAGGTGCAAC AGACCGGTGC CGAAGCCTGG CAACCCGGCC AGCGTTTTTA CACCGCCCTG
CTGGTGGTGC TGGCCTTCGT CGTCTGGACG CTGGGCCGGC GGCTGGCCGA TCGCTGGCTG
GCGTGGGTGT GCATTCACCG CATGCCGGAG GGTCGACTGC GCCGCAGTTC GCTGGCGTTC
GCCTCGGCAC TGGCGACACT CGCGACCACC GCCATCGCCC TGCAACTGCT CTATTACGCC
TGCACCCGTC ACGTGCCGTT GCCGCCGATG CTGGCGACAT TTTCCGATGA GTTCGGGAAA
GTGGTTTATG CCTGCGTGTT GATCACAGGG CTCAGCCGCG CCCTGCTGTC CACCGAGCAT
CCGTCGTGGC GCTTGCCGGC GGTGGCTGAC GAGGTGGCAA ACGCGCTGCA GCCATTTGCG
CGGATCCTCG CCGCCGCGCT GCTGGTGCTG GTGACGGCGG TGCAGGTCAG CAATGCCTCC
GGCATGAGCA GCCAGATCGT GCTCGCAGGC CGAGGCATCA TTGCGCTGGT GGTGCTGGTC
ATCGTCACAA CGTTGCTGAT GCGCGTCGGT AAAGTGCGCA AAGTGTTGGC GGCGGCCGGG
GATACGCAGG TGGCGGGCAA CACGTTTGCC GGGGTGATTT ACACCGTGGC CACCCTGGCC
ATGGTGCTGT CGTTCGGCAC CCTGCTGACG GGGTATGTGT CGCTGGCGCG GTTCATCACC
TACGAACTGG TCTGGGCGTT TATCGTGTTT TCCGGGTTTT ACCTGCTGAT GCAGTTGCTC
AAGGACAGCT GCGAGTACTT CTTCTCGCCC CGCCACTCCA GCGGCAAGGC GCTGAAACAG
CTGCTCGGCG TGGGTGATCG GCGTCTCGAA CAGGCCTCGA CCCTGCTGGC CGGTTTCGGT
AGGGCTGCGC TGCTGCTGTT GGCCGTCATC ACGCTGTTTG TCGGCGGGAT CGGCACCACC
CTGGGCCAAC TGGCCAACAA CATCGGCACG ATCCTCGGCG GCGCCGGCCT GCGCAAACTG
AACATCGTCC CCGGCCATTT GCTCAACGCG ATGCTGGCGC TGCTGATCGG CATCTACCTG
ATCCGCGCCC TGCGCCGCTG GCTCGACAAC GAGTTCCTGC CCAAGACCGA CATGGACCCG
GGCATGTGCG CCTCACTCAG CACGCTGTTT TCCAACATCG GTTATGCGGT GGTGATCCTG
CTGACCCTGT CATCGCTGGG CGTGCAATGG ACCAACCTGG CGTGGATCGT CAGCGCCCTG
TCGGTGGGCA TCGGCTTCGG CTTGCAGGAG ATCGTGAAGA ACTTCGTCTC CGGGCTGATC
CTGCTCACCG AACGGCCGGT CAAGGTCGGC GACCTGATCA GCATCAGCGG CGTCGAGGGC
GACATCCGCC GGATCAACGT GCGCGCCACC GAGATCCAGC TCAGCGATCG CTCGATCGTG
ATCGTGCCCA ACTCGCAACT GATCTCGCAG AACCTGCGTA ACGTCACCCT CGGCGGCAGC
GCCCAAGGCG TGGCGACGCT GGAGCTGATG TTCCCGCTGG ACATCGACCC CGAACAGGTG
CAGAACCTGC TGTTCGACAC CTACAAGGAA CACGAAACCA TCCTCGAAAA ACCGGCGCCG
TTCGTGCGCT TCAGCAAGCT GACGCCGGAC GGGATTACGT TGACGGTGAC CGGGTATGTG
GCCAGCCCGA GGATTGTCGG GACGACCAAG AGTGATCTGC TGTTCGAGAT ACTCAAGCGG
CTGGGGGCGG CGGGGATCGA GCTGGCGAAG CCGCCGAGTA CCTGA
|
|---|
| Protein sequence | MRNALKSLMF IALILLGSGF VAVSAADLSG TADVSTGAPL PGVSQSDLQA LQLRLDGLKQ
QISSANNYNQ LEGPQDRVQT FILDIDRLSA SLLPQQAQLA VQLGVLGAAP AEAVAAEQAD
IAAQRATLIE QKTKVDTALK NLAILKQSAT ELITQIAGIR RTLLESELTL STDSILNPGF
WAPLVNPSAD DRQRLRFFVE QVQQTGAEAW QPGQRFYTAL LVVLAFVVWT LGRRLADRWL
AWVCIHRMPE GRLRRSSLAF ASALATLATT AIALQLLYYA CTRHVPLPPM LATFSDEFGK
VVYACVLITG LSRALLSTEH PSWRLPAVAD EVANALQPFA RILAAALLVL VTAVQVSNAS
GMSSQIVLAG RGIIALVVLV IVTTLLMRVG KVRKVLAAAG DTQVAGNTFA GVIYTVATLA
MVLSFGTLLT GYVSLARFIT YELVWAFIVF SGFYLLMQLL KDSCEYFFSP RHSSGKALKQ
LLGVGDRRLE QASTLLAGFG RAALLLLAVI TLFVGGIGTT LGQLANNIGT ILGGAGLRKL
NIVPGHLLNA MLALLIGIYL IRALRRWLDN EFLPKTDMDP GMCASLSTLF SNIGYAVVIL
LTLSSLGVQW TNLAWIVSAL SVGIGFGLQE IVKNFVSGLI LLTERPVKVG DLISISGVEG
DIRRINVRAT EIQLSDRSIV IVPNSQLISQ NLRNVTLGGS AQGVATLELM FPLDIDPEQV
QNLLFDTYKE HETILEKPAP FVRFSKLTPD GITLTVTGYV ASPRIVGTTK SDLLFEILKR
LGAAGIELAK PPST
|
|---|
| |