| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_2329 |
|---|
| Symbol | |
|---|
| ID | 3715514 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | + |
|---|
| Start bp | 2684300 |
|---|
| End bp | 2687206 |
|---|
| Gene Length | 2907 bp |
|---|
| Protein Length | 968 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | |
|---|
| Product | Rhs element Vgr protein |
|---|
| Protein accession | YP_348061 |
|---|
| Protein GI | 77458556 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCTCAC CGGCCAACCA GGCTCATTTC AACCTGACCA TCGATGGCGC GGACAGCGAT
TTTCAGGTGC TGTCGTTCAC CGGTCGGGAA GCCCTCAACA CGCCCTTCGA ATTCGAGCTG
GAACTGGTCA GTGAAAAGGC CTCGATCAAC CTCGAAAGCC TGCTGCACAA ACTGGCGTTT
CTTCAGCTCT CGCCGAGCGG TACCGGTATT CACGGGCTGA TCTACAGCAT CGCCCAGGGC
GAGGCGGGCA AGCGCCTGAC CCGCTACAGG ATTTCCCTGC GCCCGCAGCT TTCATACCTC
GCGCACCGCT TCAACCAGCG CATCTTCCAG CAGATGACCG TGCAGCAAAT CATCAGCCAG
GTGCTGGAAG AACACGGCAT TCTCGCCAGC GATTACCACT TCCAGCTGAG CGCGGTTTAC
CCCGAGCGCA TCTATTGCAC GCAGTACGAT GAAAGTGACC TGCATTTCGT CCAGCGCCTG
TGCGAAGAGG AGGGGATTCA CTACCACTTC CAGCACACGT CCAGCGGCCA CAAACTGACC
TTCGGCGATG ACCAGACGGT GTTCCCGAAA CTGGCGCCGG TGGCCTATCA GCAGGACTCC
GGGCTGGTGG CGGACCAACC GGTGGTCAAG CGTTTCGGCC TGCGCCTGGC CACCCGCACC
AGCCGCACCA CGCGACGCGA TTATGACTTC GTCAAACCGA AGATCGAGCT GGAGAGCGAC
GCCAAAAGCA GCGCCCAACC GGATCTGGAA GACTACGATT ACCCGGGCCG TTTCGTGGAT
CGCGAGCGTG GCAAGCACCT GGCCAACCGC AACCTCGAAC GCCATCGCAG CGACTATCGC
CTGGCCGAGG GCAACAGCGA CCAGCCGATC CTGGTTACCG GACATTTTCT GGCCCTGACC
GACCACGCCA ACCCGACGTG GAACGACCTG TGGCTGCTCA CCGAAATCTT CCACGAAGGC
AAGCAGCCGC AAGTACTGGA AGAGTCGGTG ACCAGCGACA CCACCGACCA CAAGGACGAT
TTCCATCAGG GCTATCGCAA CCGTTTCAAC GCGATCCCGT GGGACGTGCC GTACCGTCCG
CCGCTGGACC ACCCGAAACC CAAAGTCCTC GGTTCGCAAA GCGCCGTGGT CACCGGCCCC
GAAGGCGAAG AAATCTTCTG CGACCAATAC GGCCGGGTGA AGGTGCAGTT CTTCTGGGAC
CGCGAAGGCC AGCACGACGA CAAGACCTCC TGCTGGATGC GCGTGGCCTC CAGCTGGGCC
GCCGAGACCT TTGGCTCGAT CAACATTCCG CGGGTCGGCA TGGAAGTGCT GATCACCTTC
CTCGAAGGCG ATCCCGACCA GCCGCTGATC ACCGGTTGCC TGTACCACGG CGCCAACCTG
CCGCCGTACA AATTGCCGGA CTTCAAGACC CTGGCCACGG TCAAGAGCAA GGAATACAAG
GGCAGCCGCG CCAACGAACT GCGCATCGAC GACACCACCA GCGAGATCAG CATCGCGCTG
CGCAGCGATC ACGGCGCGAG TGCGATCAAC CTTGGTTACC TGACTCATCC GCGTCCTTCA
GGCGGGCAGC CACGCGGCGA AGGTTTTGAG TTAAGAACCG ACCGCCACGG CGCCGTGCGT
GCCGGAGCCG GTCTGCTGAT TACCACCGAA CCGCGTCCGA ACGAATCGAA ACACCACAAG
GACCTGCCGG AAACCGCCGA ACGCCTGGCC ACCGCCAGCG ATCAACAGGA CGGTTTCGCC
ACGCAGGCCA AGGAACTTCA AGCCCAGGAA GCCGGCGATC AGGACGACGT GGCCAAGGCC
TTGCACGCGC AGCATCAAGG CGTGCTCGGC TCGGGACCTG CAAACCTCAC CGCCAATGAA
TTTCCCGAAT TCACTGAGCC GCATCTGGTA CTCGCCAGTC CCGCCGGCAT CGCCCTGACC
ACACCGCGCT CCAGCCACAT CGCCACCGGC GAACACCTGG CGCTGAGCAG CACCGGGCAC
ACCAGTTTTT CCATCGGCAA ACGCCTGCTG GCCAGTGCCA GTCGCGGCAT GCGCCTGTTC
GTGCAGAGCA TGGGGTGGCG TCTGGTCGCA GCGTCCGGCG ACATCGACGT CAAGGCGCTG
AAGGACAGCA TCAACCTGCT GGCCAAACTC AACATCACCG CCAACGCCGA CCGCATCACC
ATCACCGCCA AGACCGAATT GGTGATCCAG GGTGGCGGCA GCGCCACGAC CTACAACGCC
GGCGGCATCA CCCACGCCAC CAGTGGCCCG TACACCGCCC ACGCGGCGAA CTTTGCTTAC
ACCGGTGCCA AGAGTCTCGC GGGCGTGTTC CCGGAGCCGC CGAAACCGGG CAAGGGCAAC
CTCGAATTGT TCAACCAGTA CGCCGGTCGC CAGGGCATCA AGGACGGCGA TTACGAAGTC
ATCGATGCCT TGGGCAAAAG CATCAAGGGC AAGCTCGACG CGAAGGGCTT CGCCAGCGTC
GCCGGCGCCG CACCGGGGCC AGCGCGGGTG CTGTTCGGCA AGGATCCGGC GGATACCTGG
AGTGAAGGCA GTTACATCGG TAAACCGGAA TGGCCGTTGA ATCCGCCGGG GGCCGAAGAC
ATTCCGAGTC AGGTGCAGGC GATGGTGGCG CAGGCGCTGC CGAGCAAGAA CTGGGACATG
TTGGAGAAGG GCAAGGAATT GGCACAGACA GGGATGGGTG CAATGCAGAC CGCACAAGGC
GCGATGCAAA CGGCGCAGCA GGTGAAAGGT GTGGTGCAGG GCGGGGTGGC CGGGCTGCCG
AAACTGGCGA GTGCGGCGAT GCCGAGTGCG TCGGGAATCC TCGGGGCGGC GAGCAAGGCG
GGCAAGTTGC CGAGTCTGCC GGTGCCGACG CTTCCAAAAC CTGCTTTGAA TACTCCGGAA
TTGCTGGCGG GTGAGGTGCT GTCATGA
|
|---|
| Protein sequence | MFSPANQAHF NLTIDGADSD FQVLSFTGRE ALNTPFEFEL ELVSEKASIN LESLLHKLAF
LQLSPSGTGI HGLIYSIAQG EAGKRLTRYR ISLRPQLSYL AHRFNQRIFQ QMTVQQIISQ
VLEEHGILAS DYHFQLSAVY PERIYCTQYD ESDLHFVQRL CEEEGIHYHF QHTSSGHKLT
FGDDQTVFPK LAPVAYQQDS GLVADQPVVK RFGLRLATRT SRTTRRDYDF VKPKIELESD
AKSSAQPDLE DYDYPGRFVD RERGKHLANR NLERHRSDYR LAEGNSDQPI LVTGHFLALT
DHANPTWNDL WLLTEIFHEG KQPQVLEESV TSDTTDHKDD FHQGYRNRFN AIPWDVPYRP
PLDHPKPKVL GSQSAVVTGP EGEEIFCDQY GRVKVQFFWD REGQHDDKTS CWMRVASSWA
AETFGSINIP RVGMEVLITF LEGDPDQPLI TGCLYHGANL PPYKLPDFKT LATVKSKEYK
GSRANELRID DTTSEISIAL RSDHGASAIN LGYLTHPRPS GGQPRGEGFE LRTDRHGAVR
AGAGLLITTE PRPNESKHHK DLPETAERLA TASDQQDGFA TQAKELQAQE AGDQDDVAKA
LHAQHQGVLG SGPANLTANE FPEFTEPHLV LASPAGIALT TPRSSHIATG EHLALSSTGH
TSFSIGKRLL ASASRGMRLF VQSMGWRLVA ASGDIDVKAL KDSINLLAKL NITANADRIT
ITAKTELVIQ GGGSATTYNA GGITHATSGP YTAHAANFAY TGAKSLAGVF PEPPKPGKGN
LELFNQYAGR QGIKDGDYEV IDALGKSIKG KLDAKGFASV AGAAPGPARV LFGKDPADTW
SEGSYIGKPE WPLNPPGAED IPSQVQAMVA QALPSKNWDM LEKGKELAQT GMGAMQTAQG
AMQTAQQVKG VVQGGVAGLP KLASAAMPSA SGILGAASKA GKLPSLPVPT LPKPALNTPE
LLAGEVLS
|
|---|
| |