Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pfl01_2139 |
Symbol | |
ID | 3715875 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas fluorescens Pf0-1 |
Kingdom | Bacteria |
Replicon accession | NC_007492 |
Strand | - |
Start bp | 2422163 |
End bp | 2423716 |
Gene Length | 1554 bp |
Protein Length | 517 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | |
Product | RND efflux system, outer membrane lipoprotein, NodT |
Protein accession | YP_347871 |
Protein GI | 77458366 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.971447 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCTGAAA CGCCAGCCCT GCTGATCCGT CCCGGCCACC TGCTGTTGCT CGGTGCGCTG AGCCTTGGCG GCTGCCTGCG GCTGGGCCCG GATTTCCAGC CGCCGGCGGA GGACTGGAGC AAGCAATGGC AAAGTCCGGC ACTGGAGCAG GCCAGCGAAC GCGGCACAGT GCCGGACCTG CGCCAGTGGT GGCAGGTGTT TGCCGATCCA GTGCTCGACC GCTTGATCAG CGACGCCGAA GCCCGCAACA GCAGCCTGAA GATCGCCGGC CTGCGGGTCC TCGAAGCCCG CGCGCAACTG GGCATCGCCG ACAGCGGTCG CTACCCGCAA CTGCAACAGG CCAGCGCCGA CAGCCTGTAC ATCGACCGCC ACCAGTCCGG CGGCACCAAC CCGCAGGACT TGCACTTCTG GCAGCACAGC GCCGCGTTCG ATGTCGGCTG GGAACTGGAT TTCTGGGGTC GCTTCAGCCG CGCCATCGAA TCCGCCGACG CCAGCTACTT CGCCGCCCAG GCCAACTACG AAGACGCCCT CGTTCTATTA CGCGCCCAAG TGGCCGACAC CTACTTTGCC CTGCGCACCA CCGAAGCCCG GCTGCGGGTC GCCCGGGAAA ACGCCGCCCA GCAAAAACGC AATTTCGAAA TCACCGAAAA ACTCTTTCGC AGCGGCCAGA CCGCCGAACT CGACCTGCAA CAGGCCAGGA CCCAATACCT CGGCACCCTG AGCAGCATTC CGGCGTTCGA AGATCAATTG CTGCGTACCC GCAACGCGCT GGCGGTGCTG GTCGGCCAGC CGCCCGGTGG CGCGGCGTTT CTGGCGGAAC AACCGGGGCT GATTCCACTG GTGGATCGCG CGGTGTTGCA GGATGTCCCG GCCAACCTGT TGCTGCGCCG TCCCGATGTG CGCGCGGCGG AGCTGAACGT GGCCGCGCAA TCGGCGCTGG TCGGCGTGGC GGAAACCGAC CTTTATCCCT CGCTGACCTT GCTCGGCAGC ATCGTCTGGT CCAGCGACAC CCTCGGCGCC ACTCCGCGCA GCCTCGACCT GATCGGTGGC CCGAGCCTGC GCTGGAACCT GTTCGACTAC GGCCGCATCC ACAACAACAT CCGCGTGCAG GATGCGCGGT TGCAGCAACT GATCGAAGCC TATCGCGACA AAGTCCGCCA GGCTGCCCGC GAGGCCGACG ACGCTGCCAG CGGCCTGACC AAAGCGCTGG AACGCGAACG CATTCTCGGC GAGGCCGAAG GCGCGGCGCG ACGTTCGCTG GTGCTGGCCA ACACTCAATA TCGCGAAGGC TATTCAGACT TTCAGCGGGT GCTCGATGCC CAGCGTGCGT TGCTGGAGCT ACAGGACAAC TATCTGGTCA GCCGCAGCAA CGCCGTGAGC AATCTGATCG CTTTGTACCG CGCCGTCGGT GGTGGCTGGC AAAGCGCCGG ACCGCAGATT GATTCAGCGA CCCGACAGCA GATGCAGCAA CGCACCGACT GGGGCGATCT GCTGAGCGCC CCGCCGCCCC GACCGACCTA TCCGATTCCC TCGCAGGTAG ACCGCCATGA GTGA
|
Protein sequence | MPETPALLIR PGHLLLLGAL SLGGCLRLGP DFQPPAEDWS KQWQSPALEQ ASERGTVPDL RQWWQVFADP VLDRLISDAE ARNSSLKIAG LRVLEARAQL GIADSGRYPQ LQQASADSLY IDRHQSGGTN PQDLHFWQHS AAFDVGWELD FWGRFSRAIE SADASYFAAQ ANYEDALVLL RAQVADTYFA LRTTEARLRV ARENAAQQKR NFEITEKLFR SGQTAELDLQ QARTQYLGTL SSIPAFEDQL LRTRNALAVL VGQPPGGAAF LAEQPGLIPL VDRAVLQDVP ANLLLRRPDV RAAELNVAAQ SALVGVAETD LYPSLTLLGS IVWSSDTLGA TPRSLDLIGG PSLRWNLFDY GRIHNNIRVQ DARLQQLIEA YRDKVRQAAR EADDAASGLT KALERERILG EAEGAARRSL VLANTQYREG YSDFQRVLDA QRALLELQDN YLVSRSNAVS NLIALYRAVG GGWQSAGPQI DSATRQQMQQ RTDWGDLLSA PPPRPTYPIP SQVDRHE
|
| |