| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_1801 |
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| Symbol | ligA |
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| ID | 3716561 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas fluorescens Pf0-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007492 |
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| Strand | + |
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| Start bp | 2010582 |
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| End bp | 2012939 |
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| Gene Length | 2358 bp |
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| Protein Length | 785 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | |
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| Product | NAD-dependent DNA ligase LigA |
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| Protein accession | YP_347533 |
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| Protein GI | 77458028 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0162634 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGCCG CCAAAGACCG CATTCTAGAG CTGCGCGCTG AACTCGATCA GCACAACTAC
CGTTACCACG TCCTCGATGA GCCGAGCATT CCGGATGCCG AGTACGACCG GTTGTTCCAC
GAGCTCAAGG CGCTGGAAGC GGCCAACCCG GAACTGATCA CCAGCGACTC GCCGACCCAG
CGCGTCGGCA GCGTGGCGCT GACCGCGTTC ACCCAGGTGC GTCACGAAGT GCCGATGCTC
AGCCTCGGCA ACGCCTTCGA AGAAACCGAC ATGCGCGAGT TCGACCGCCG GGTGACCGAA
GGTCTGGATC TGCCGGCCGG CGATCTGTTC GGTGGTGGCG CGGCGGTGGA ATACAGCTGC
GAGCCGAAAC TCGATGGTCT GGCGGTCAGC CTGCTGTATC AGGACGGCGT GCTGGTGCGC
GGTGCCACGC GCGGCGACGG CACCACCGGC GAAGACATCA GCGTCAACGT GCGCACCGTG
CGCAACATTC CGCTGAAGCT GCACGGCACG GGCTGGCCGG CGACCCTGGA AGTGCGTGGC
GAAGTGTTCA TGTCCAAGGC CGGTTTCGAA CGCCTCAACG CTTCGCAACT GGAAGTCGGC
GGCAAGACTT TCGCCAACCC GCGCAACGCC GCCGCCGGCA GCCTGCGTCA GCTGGATTCG
AAGATCACCG CCAACCGGCC GCTGGAATTC TGCTGCTACG GCATCGGCCA GGTGTCCCAC
GATATTTCCG ACACCCACAT CGGCAACCTC CAGCAACTGA AAGCCTGGGG CATGCCGATC
AGCCACGAAT TGAAACTGGC CAAGGGCATC GGCGAATGCC TGGATTATTA CCGCGATATC
GGTGAGCGCC GTAATTCGCT GGCCTATGAA ATCGACGGCG TGGTGTTCAA GGTAAACAGC
ATTGCCGACC AGCGCGAACT GGGCTTCCGC GCCCGTGAAC CGCGCTGGGC CATCGCCCAC
AAATTCCCGG CCATGGAAGA GCTCACCGAG CTGCTCGACG TGGAGTTCCA GGTCGGCCGT
ACCGGCGCCG TCACCCCTGT GGCGCGCTTG AAACCGGTCA AGGTCGCTGG CGTCACGGTG
GCCAACGCCA CATTGCACAA CATGGATGAA GTCGCCCGGC TGGGCCTGAT GATCGGCGAC
ACGGTGATCA TTCGTCGCGC TGGCGATGTG ATCCCGCAAG TGGTGCAAGT GGTCATGGAG
CGCCGCCCGG AAGATGCGCG GCCGGTGCAG ATTCCTGAGA GCTGCCCGGT CTGCGGCTCC
CACGTCGAAC GCACGCAACT GGTCAAGCGC AGCAAGGGCA AGGAAACCAT CAGCGAGGGC
GCGGTGTATC GCTGCGTCGG CCGACTGGCC TGCGGTGCGC AACTGAAGCA GGCGATCATT
CACTTCGTCT CCCGTCGTGC GATGGACATC GAAGGCCTGG GCGACAAGAG TGTCGAGCAG
TTGGTCGATG AGGGGCTGGT CAGTTCGCCG GCTGATCTTT ATGCGCTGAA GTTCGAGGAC
ATCGTCGACC TCGAGGGCTT TGCCGAGGTG TCGAGCAACA AGTTGCTGGC TGCGATTGAA
GACAGCAAGA AACCGGGTCT GGCGCGCTTC ATCTATGCGC TGGGCATTCC AGATGTCGGC
GAAGAGACGG CCAAGGTGCT GGCGCGTTCG CTGGGGTCGC TGGAGCGTGT TCAGCAAGCC
TTGCCGCAAG TGCTGACTTA CCTGCCGGAC ATCGGTCTGG AAGTGGCGCA CGAGATTCAC
AGCTTCTTCG AAGATGCGCA CAACCGGCAG GTGATCACCG AGCTGCTGGG CCACGGTTTG
CAGATTCAGG ATCAGGGCGA GCTGGGCGCC GAGTTTGCCG CCAGCACCAC GCTGGGTGGC
TTCCTCGACA AGCTGCACAT TCCCTCGGTG GGCCCGGGCG GGGCGCAGAA GCTGGCGGAC
AAGTTCGAAT CGCTGGAAGG GGTGATGAAT GCGGACTGGC TGGACATGCG CCAGGCATTG
CCGGAGAAGC AGGCCAACTC GGTTCGCGAG TTCTTCGCCT TGCCAGAACA TCGTCAACTG
GCTGAAGACG CCGAGAAGCA ACTGCGCGAT TTCGGTATGC ACTGGCAGAG CGAAAAGAAA
GTCGTCGAAG GCCTGCCATT GGCCGGGGAG ACCTGGGTAC TGACCGGCAA GGTCGAGCTG
ATGAGCCGCG ACGTGGCCAA GGAACACCTG GAAAGCCTCG GCGCCAAGGT CGCCGGCTCC
GTGTCGGCCA AGACTCATTG CGTGGTCGCC GGGCCGGGCG CCGGGTCGAA ACTGACCAAG
GCCAACGAAC TGGGCGTGAA AGTGATGGAT GAAGAGGCGT TTATCGCGTT CCTGAAAGGA
CACGGTATTT CCGCCTGA
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| Protein sequence | MTAAKDRILE LRAELDQHNY RYHVLDEPSI PDAEYDRLFH ELKALEAANP ELITSDSPTQ
RVGSVALTAF TQVRHEVPML SLGNAFEETD MREFDRRVTE GLDLPAGDLF GGGAAVEYSC
EPKLDGLAVS LLYQDGVLVR GATRGDGTTG EDISVNVRTV RNIPLKLHGT GWPATLEVRG
EVFMSKAGFE RLNASQLEVG GKTFANPRNA AAGSLRQLDS KITANRPLEF CCYGIGQVSH
DISDTHIGNL QQLKAWGMPI SHELKLAKGI GECLDYYRDI GERRNSLAYE IDGVVFKVNS
IADQRELGFR AREPRWAIAH KFPAMEELTE LLDVEFQVGR TGAVTPVARL KPVKVAGVTV
ANATLHNMDE VARLGLMIGD TVIIRRAGDV IPQVVQVVME RRPEDARPVQ IPESCPVCGS
HVERTQLVKR SKGKETISEG AVYRCVGRLA CGAQLKQAII HFVSRRAMDI EGLGDKSVEQ
LVDEGLVSSP ADLYALKFED IVDLEGFAEV SSNKLLAAIE DSKKPGLARF IYALGIPDVG
EETAKVLARS LGSLERVQQA LPQVLTYLPD IGLEVAHEIH SFFEDAHNRQ VITELLGHGL
QIQDQGELGA EFAASTTLGG FLDKLHIPSV GPGGAQKLAD KFESLEGVMN ADWLDMRQAL
PEKQANSVRE FFALPEHRQL AEDAEKQLRD FGMHWQSEKK VVEGLPLAGE TWVLTGKVEL
MSRDVAKEHL ESLGAKVAGS VSAKTHCVVA GPGAGSKLTK ANELGVKVMD EEAFIAFLKG
HGISA
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