| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_1777 |
|---|
| Symbol | |
|---|
| ID | 3716575 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | + |
|---|
| Start bp | 1974816 |
|---|
| End bp | 1975850 |
|---|
| Gene Length | 1035 bp |
|---|
| Protein Length | 344 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | |
|---|
| Product | OmpF |
|---|
| Protein accession | YP_347509 |
|---|
| Protein GI | 77458004 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.000465517 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTGA AAAACACCTT GGGCTTGGCC ATTGGTTCTT TGATTGCCGC CACTTCTTTC
GGCGCTCTGG CACAAGGCCA AGGCGCAGTT GAAATCGAAG GCTTCGCAAA GAAAGAACAA
TTCGACAGCG CTCGTAACTT CAAGAACAAC GGCAACCTGT TCGGCGGTTC GATCGGTTAC
TTCCTGACCG ACGACGTTGA ACTGCGTCTG GGCTACGACG AAGTGCACAA CGTGCGTGCC
GACGATGGCA AGAACGTCAA GGGCGCCAAC ACCGCTCTGG ACGCTCTGTA CCACTTCAAC
AACCCAGGCG ACATGCTGCG TCCATACGTT TCGGCCGGTT TCTCTGACCA GAGCATCGAC
CAGAACGGTT CGAACGGTCG CAACCGTTCC ACCTTCGCCA ACCTGGGCGC CGGTGCCAAG
CTGTACTTCA CTGACAACTT CTACGCCCGT GCTGGCGTTG AAGCTCAGTA CAACATCGAC
CAGGGCGACA CCGAGTGGGC TCCAAGCGTC GGTATCGGTG TGAACTTCGG TGGCGGCTCC
AAGCCAGCCG CTGCTCCAGT TCCAGCACCA GCTGAAGTCT GCTCCGACAG CGACAACGAC
GGCGTTTGCG ACAACGTTGA CAAGTGCCCG GACACCCCAG CCAACGTAAC TGTTGACGCT
GATGGCTGCC CTGCAGTTGC TGAAGTTGTT CGTGTTGAGC TGGACGTTAA GTTCGACTTC
GACAAGTCGG TTGTGAAGCC AAACAGCTAT GGCGACATCA AAAACCTGGC TGACTTCATG
AAGCAGTACC CATCCACCAC CACTACTGTT GAAGGTCACA CTGACTCCGT CGGTCCTGAC
GCTTACAACC AGAAACTGTC CGAGCGTCGT GCAAACGCCG TTAAGCAAGT TCTGACCAAC
CAGTACGGTG TTGAATCGTC CCGCGTTCAG TCGATCGGCT ACGGCGAATC CCGCCCAGTT
GCTGACAACA AAACTGAAGC TGGCCGTGCT GTTAACCGTC GCGTAGAAGC GCAGGTTGAA
GCTCAAGCTA AGTAA
|
|---|
| Protein sequence | MKLKNTLGLA IGSLIAATSF GALAQGQGAV EIEGFAKKEQ FDSARNFKNN GNLFGGSIGY
FLTDDVELRL GYDEVHNVRA DDGKNVKGAN TALDALYHFN NPGDMLRPYV SAGFSDQSID
QNGSNGRNRS TFANLGAGAK LYFTDNFYAR AGVEAQYNID QGDTEWAPSV GIGVNFGGGS
KPAAAPVPAP AEVCSDSDND GVCDNVDKCP DTPANVTVDA DGCPAVAEVV RVELDVKFDF
DKSVVKPNSY GDIKNLADFM KQYPSTTTTV EGHTDSVGPD AYNQKLSERR ANAVKQVLTN
QYGVESSRVQ SIGYGESRPV ADNKTEAGRA VNRRVEAQVE AQAK
|
|---|
| |