Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pfl01_1776 |
Symbol | |
ID | 3716574 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas fluorescens Pf0-1 |
Kingdom | Bacteria |
Replicon accession | NC_007492 |
Strand | + |
Start bp | 1974118 |
End bp | 1974708 |
Gene Length | 591 bp |
Protein Length | 196 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | |
Product | RNA polymerase sigma factor SigX |
Protein accession | YP_347508 |
Protein GI | 77458003 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.00376344 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAATAAAG CCCAAACGCT ATCCACGCGC TACGACCCCC GCGAGCTCTC TGATGAGGAG TTGGTCGCGC GCTCGCATAC CGAGCTTTTT CACGTGACGC GTGCGTATGA AGAACTGATG CGGCGTTACC AGCGGACATT ATTTAACGTG TGCGCACGAT ATCTTGGGAA CGATCGCGAT GCAGACGATG TCTGTCAGGA AGTGATGTTG AAGGTGCTGT ACGGGCTGAA GAACTTCGAG GGGAAATCGA AGTTCAAGAC ATGGCTGTAC AGCATCACCT ACAACGAATG CATCACACAG TATCGGAAGG AACGGCGAAA GCGTCGCTTG ATGGACGCAC TGAGTCTTGA CCCCCTCGAG GAAGCGTCCG AAGAAAAGGC GCCGAAACCC GAGGAGAAGG GCGGACTGGA TCGCTGGCTG GTGTATGTGA ACCCGATTGA CCGGGAAATT CTGGTGCTAC GATTTGTCGC AGAGCTGGAG TTTCAGGAGA TCGCAGACAT CATGCACATG GGGTTGAGTG CGACAAAAAT GCGTTACAAA CGCGCTCTTG ATAAATTGCG TGAGAAATTT GCAGGCATTG CTGAAACTTA G
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Protein sequence | MNKAQTLSTR YDPRELSDEE LVARSHTELF HVTRAYEELM RRYQRTLFNV CARYLGNDRD ADDVCQEVML KVLYGLKNFE GKSKFKTWLY SITYNECITQ YRKERRKRRL MDALSLDPLE EASEEKAPKP EEKGGLDRWL VYVNPIDREI LVLRFVAELE FQEIADIMHM GLSATKMRYK RALDKLREKF AGIAET
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