Gene Pfl01_1776 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPfl01_1776 
Symbol 
ID3716574 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas fluorescens Pf0-1 
KingdomBacteria 
Replicon accessionNC_007492 
Strand
Start bp1974118 
End bp1974708 
Gene Length591 bp 
Protein Length196 aa 
Translation table11 
GC content52% 
IMG OID 
ProductRNA polymerase sigma factor SigX 
Protein accessionYP_347508 
Protein GI77458003 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.00376344 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAATAAAG CCCAAACGCT ATCCACGCGC TACGACCCCC GCGAGCTCTC TGATGAGGAG 
TTGGTCGCGC GCTCGCATAC CGAGCTTTTT CACGTGACGC GTGCGTATGA AGAACTGATG
CGGCGTTACC AGCGGACATT ATTTAACGTG TGCGCACGAT ATCTTGGGAA CGATCGCGAT
GCAGACGATG TCTGTCAGGA AGTGATGTTG AAGGTGCTGT ACGGGCTGAA GAACTTCGAG
GGGAAATCGA AGTTCAAGAC ATGGCTGTAC AGCATCACCT ACAACGAATG CATCACACAG
TATCGGAAGG AACGGCGAAA GCGTCGCTTG ATGGACGCAC TGAGTCTTGA CCCCCTCGAG
GAAGCGTCCG AAGAAAAGGC GCCGAAACCC GAGGAGAAGG GCGGACTGGA TCGCTGGCTG
GTGTATGTGA ACCCGATTGA CCGGGAAATT CTGGTGCTAC GATTTGTCGC AGAGCTGGAG
TTTCAGGAGA TCGCAGACAT CATGCACATG GGGTTGAGTG CGACAAAAAT GCGTTACAAA
CGCGCTCTTG ATAAATTGCG TGAGAAATTT GCAGGCATTG CTGAAACTTA G
 
Protein sequence
MNKAQTLSTR YDPRELSDEE LVARSHTELF HVTRAYEELM RRYQRTLFNV CARYLGNDRD 
ADDVCQEVML KVLYGLKNFE GKSKFKTWLY SITYNECITQ YRKERRKRRL MDALSLDPLE
EASEEKAPKP EEKGGLDRWL VYVNPIDREI LVLRFVAELE FQEIADIMHM GLSATKMRYK
RALDKLREKF AGIAET