| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_1740 |
|---|
| Symbol | |
|---|
| ID | 3716634 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | + |
|---|
| Start bp | 1932130 |
|---|
| End bp | 1934274 |
|---|
| Gene Length | 2145 bp |
|---|
| Protein Length | 714 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | |
|---|
| Product | 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase |
|---|
| Protein accession | YP_347472 |
|---|
| Protein GI | 77457967 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAAG CCATTCGTTA CGAAAAAGGC CAGGACGGCA TCGTCCTCCT GACCATCGAC
ATGCCGGGCC AGAGCGCCAA CACCATGAAC GCGGTGTACC GCGAGGCCAT GGCCGACAGC
GTCGCCCGAC TGCTGGCGGA AAAAGATGAC ATCGCCGGGG TGATCATCAC TTCGGCCAAG
AAAACCTTCT TCGCCGGTGG CGACCTGAAT GAACTGATCA AGGTCGGCAA GCCCGAAGCC
AAGGCCTTCT ACGACATGGT GCTGACCCTC AAGGGCCAGT TGCGCACCCT GGAAACCCTC
GGCAAACCGG TGGTCGCGGC GATCAACGGC GCGGCACTCG GCGGTGGCTG GGAAATCTGC
CTGGCCTGCC ACCACCGCGT TGCGTTGGAC GATGCGTCGG TGCAACTCGG TTTGCCGGAA
GTGACCCTCG GTTTATTACC GGGCGGCGGC GGAGTTGTGC GCATGGTGCG CATGCTTGGC
ATCGAAAAGG CTTTGCCGTA TCTGCTTGAA GGCAAGAAAG TCCGTCCGCA GCAGGCGTTG
CAGGCAGGTT TGATCGATGA ACTGGCGGCG GATCGCGATG AGCTGCTGGC CAAGGCCCGG
GCGTGGATTC TGGCCAATCC TGCGGCCGTG CAGCGTTGGG ATGTGAAGGG TTATCAGATT
CCCGGCGGCA CGCCATCCAA TCCGAAAGTT GCGCAGATGC TGGCGATTGC GCCGTCGATC
CTGCGCACCA AAACCCAAGG CACGTTGCCG GCACCGGAGA AGATTCTTTG CGCGGCGGTG
GAGGGCGCGC AGGTGGATTT CGACACGGCG CACCTGATCG AAACCCGCTA CTTTACCGTA
CTGACCACCG GCCAGATCTC GAAAAACCTG ATCGGCACCT TCTGGTTTCA GCTCAATGAA
ATCAATGCCG GCGGTTCGCG GCCGCAGGGT TTTGCGCCTT ATGTGACGAA GCGTGTGGGC
GTGCTTGGCG CCGGAATGAT GGGGGCGGGA ATCGCGTACG TCAGCGCTGT GGCCGGAATC
GATGTGGTGC TCAAGGACAT CAACCTTGCT GCTGCCGAAA AGGGCAAGGC GCATTCGGCG
GCGCTGCTGG ATAAAAAAGT CGCTCGTGGG CAAATGTCTG CGCAGCAGCG TGAAGCGGTG
CTGGCGCGTA TCCAGCCGAC CGAAAGCGAT GCCGATCTGG CAGGTTGCGA TCTGATCATC
GAGGCGGTGT TCGAGGATCG TCAGCTCAAG GCCAAGGTCT CGGCGGCAGC GCAACAGGTG
GTCGGCGCCG ATGCTGTGAT TGCTTCCAAC ACCTCGACCT TGCCAATCAC TGGCTTGGCG
ACTGCGGTAC CGGATCAAAG CAAGTTCATC GGCCTGCACT TCTTTAGCCC GGTGGAAAAG
ATGCCGCTGG TGGAAATCAT CAAGGGCGCA CAAACCAGCG ACGAAACCCT CGCACGCGGG
TTCGATTTCG TACTGCAAAT CAAGAAAACT CCGATTGTGG TCAACGACAG TCGCGGCTTC
TTCACGTCGC GAGTATTCGG CACCTTTACC AATGAAGGTA TTGCGATGCT GGGTGAGGGC
GTCAGTGCGC CGATGATCGA GACCGAAGCG CGCAAGGCCG GGATGCCTGT CGGGCCGCTG
GCGATCTCTG ACGAAGTTTC CCTCAGCCTG ATGAGCCATA TCCGTCAGCA AACGGCCAAA
GACCTTCAAG CAGAAGGGAA AGCGCTGATT GAGCACCCGG CGTTCGCCGT GATTGACCTG
CTGCTCAACG AATACAAGCG GCCGGGCAAG GCAGCGGGAG GCGGTTTTTA TGAGTACCCG
GCGGGTGGGC AAAAACATCT GTGGCCCGAA CTGAAAACCC GTTTCGAGAA AGCCGACGGG
CAGATTTCGC CGAAAGATGT GCGTGACCGG TTGCTGTTCG TGCAGGCCAT CGAAACCGTG
CGTTGCGTGG AGGAGGGTGT ACTGACGTCG ACGGCGGACG CCAACGTCGG CTCGATCTTC
GGCATCGGTT TTGCGGCATG GACGGGCGGC GCGTTGCAGT TCATCAACCA ATATGGCGTG
AAGGACTTTG TCGCCCGGGC GCAGTACCTG GCGGAGCAGT ACGGTGAGCG TTTCGCACCG
CCTGCGCTGC TGCTGGAAAA AGCCGCGAAG GGCGAATTGT TCTAA
|
|---|
| Protein sequence | MTQAIRYEKG QDGIVLLTID MPGQSANTMN AVYREAMADS VARLLAEKDD IAGVIITSAK
KTFFAGGDLN ELIKVGKPEA KAFYDMVLTL KGQLRTLETL GKPVVAAING AALGGGWEIC
LACHHRVALD DASVQLGLPE VTLGLLPGGG GVVRMVRMLG IEKALPYLLE GKKVRPQQAL
QAGLIDELAA DRDELLAKAR AWILANPAAV QRWDVKGYQI PGGTPSNPKV AQMLAIAPSI
LRTKTQGTLP APEKILCAAV EGAQVDFDTA HLIETRYFTV LTTGQISKNL IGTFWFQLNE
INAGGSRPQG FAPYVTKRVG VLGAGMMGAG IAYVSAVAGI DVVLKDINLA AAEKGKAHSA
ALLDKKVARG QMSAQQREAV LARIQPTESD ADLAGCDLII EAVFEDRQLK AKVSAAAQQV
VGADAVIASN TSTLPITGLA TAVPDQSKFI GLHFFSPVEK MPLVEIIKGA QTSDETLARG
FDFVLQIKKT PIVVNDSRGF FTSRVFGTFT NEGIAMLGEG VSAPMIETEA RKAGMPVGPL
AISDEVSLSL MSHIRQQTAK DLQAEGKALI EHPAFAVIDL LLNEYKRPGK AAGGGFYEYP
AGGQKHLWPE LKTRFEKADG QISPKDVRDR LLFVQAIETV RCVEEGVLTS TADANVGSIF
GIGFAAWTGG ALQFINQYGV KDFVARAQYL AEQYGERFAP PALLLEKAAK GELF
|
|---|
| |