| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_1470 |
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| Symbol | |
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| ID | 3717148 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas fluorescens Pf0-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007492 |
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| Strand | + |
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| Start bp | 1650620 |
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| End bp | 1652407 |
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| Gene Length | 1788 bp |
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| Protein Length | 595 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | |
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| Product | LysM domain-containing protein |
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| Protein accession | YP_347202 |
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| Protein GI | 77457697 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.368966 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.129995 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCGGAA GTCGGCACGT GGTACTGCGT TGCGCCAACT CGCTGCTGGT GGCCGGTGTT
CTCACCTGGT CCACCGCGTC AATGGCGCTG GGGCTCGGTG ACATCACCGT GCATTCAGCC
CTCAATCAGC CGCTCAAGGC TGACATCGCC CTGGTGGATG TCGGGGGCGT CAGCGAAAGC
GAACTGGCGG TCCGTCTGGC CTCGGCGGAC GAGTTTGGCC GCGCCGGCGT CGAGCGCGTG
TTCTTTCTCA ACAACCTCAA GTTCACCCCG ATCCTGCGTG GCAATCGCAA CATGATCCGG
GTGACTTCCA GCAAACCGGT CAACGAACCC TTTCTGAATT TCCTGGTGCA GCTCGATCAG
CCCAACGGCC ACCTGCTGCG CGAATACACC GTACTGATCG ACCCGCCGGG TTCGCCGGGA
ATTGTCCCGG CCACCGATGA GCCAACTGCG CGTGCGCAGT CGTCGGAATT CCCGACCCCC
GAGGCTCCGT CCGCAACCAC GCCGGCCAAA CCTGCTGCGC CTGTTCAGCC ACCGGCTCCG
GTCGTTGACG CGCAGGCTGA GCAACTGGCA GCGAGCCTTG TGCAGAACCA GCAACTGCAA
AAAACCATCG ATGAATTGAA CGTGAAGCTT CAGGCCCAGG AAGTGCTGAT CGCTGACGGC
AAGAAACAGC TCGGTGACGT ACAGGCCCGC CTGATTGAGG TGCAACAGGC GCGGCCGGCA
CCGGTAGCCC CTGTGGTCCC TGCGCCTGCG CCGGTCATTG CCCCGGTCGA GTCTCAAGAG
GATTCACTCA ACTGGCCGTT GCTCGGCGGA CTGCTGCTGG TACTGGGTTT GTTGGTGGCA
GGGCTTTACG TGCGCCGGCA ACGACAGCAG GCGCAAGGGA CTGCTGCGCC GTTGCCGTTC
CTGCCGGCTC GAAACGAACC CCCGGACGCC GATGCCGAAC CGATGCAGCC GAGCGCCGTT
CACAGTGCTG TCGAACATCG CGAAGAACAC GCCAACGGCG ATGTGCTGGA AGCGGTCGGC
ATTTATCTGG CCTACGGTCG TTTGGGTGAG GCTGCCGGCC TGTTGCGCGA TGCGTTGCAG
CGAGAGCCGG AGCGCATCGA CCTCGGCGTG CAGTTACTTG AAGTGCTGGG GCGGCAGGGC
GACACGCCGG CCTATGACGA GCAGGAAAAT CGTCTGCGCT CGCTCGGGGT CGAGGATCGG
CGTTTGCAGG AAATTCGCGC CCGCTACCCG AAACTGGTCA GCGCAGCACC TCTGGTGGCG
GCGGCCCCGG TGATTGCCGC GTTGCCGATC GACCCCGCGA CGCCTGTGGA GCCGGTGGCC
GAAGACAATT TCGAGCTGAA TCTGGATCAG CTCTCGATGG CGTCCAGTTG GGATCTTGAG
GAAACTCGCC CGACCAGCGC GGCGCCTGAA CAGGCACCCT CAACGCTCGG CTCCGATCTG
CAGGTATTGC CACAGGATTT CGAACTGCCG GAAAGCCTGC CCGACGAAGC GGAAACCGCC
GAGCTCGAAT GGATCGTCGA GCCGGAAGCG CAACCGCTGG ACGAGGACTT TCTCAACGAG
TTTGGCGATC CCGGCCCGAC GCTGTCGCTG GAGCCACTGG AGTTGCATGC TCCGGAACTG
GACTCCGAAC CCTCGGACGC CGCCAACGCC GGCAAGCTCG AACAGGCCCA GACCTGCATC
GATGACGGCG ATATCGACAG CGCCATTGCC TTGCTCAACG AACTGCTCAA GGAAGCCGAC
GAACCCCTCA AGCAAACGGC GCGCACGCTG TTGGCGGGGA TTCGCTGA
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| Protein sequence | MLGSRHVVLR CANSLLVAGV LTWSTASMAL GLGDITVHSA LNQPLKADIA LVDVGGVSES
ELAVRLASAD EFGRAGVERV FFLNNLKFTP ILRGNRNMIR VTSSKPVNEP FLNFLVQLDQ
PNGHLLREYT VLIDPPGSPG IVPATDEPTA RAQSSEFPTP EAPSATTPAK PAAPVQPPAP
VVDAQAEQLA ASLVQNQQLQ KTIDELNVKL QAQEVLIADG KKQLGDVQAR LIEVQQARPA
PVAPVVPAPA PVIAPVESQE DSLNWPLLGG LLLVLGLLVA GLYVRRQRQQ AQGTAAPLPF
LPARNEPPDA DAEPMQPSAV HSAVEHREEH ANGDVLEAVG IYLAYGRLGE AAGLLRDALQ
REPERIDLGV QLLEVLGRQG DTPAYDEQEN RLRSLGVEDR RLQEIRARYP KLVSAAPLVA
AAPVIAALPI DPATPVEPVA EDNFELNLDQ LSMASSWDLE ETRPTSAAPE QAPSTLGSDL
QVLPQDFELP ESLPDEAETA ELEWIVEPEA QPLDEDFLNE FGDPGPTLSL EPLELHAPEL
DSEPSDAANA GKLEQAQTCI DDGDIDSAIA LLNELLKEAD EPLKQTARTL LAGIR
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