| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_1462 |
|---|
| Symbol | |
|---|
| ID | 3717140 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | - |
|---|
| Start bp | 1634796 |
|---|
| End bp | 1636154 |
|---|
| Gene Length | 1359 bp |
|---|
| Protein Length | 452 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | |
|---|
| Product | Type I secretion outer membrane protein, TolC |
|---|
| Protein accession | YP_347194 |
|---|
| Protein GI | 77457689 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGTAC TAACCCCCCT CTGCAGCGCG GTTTTGCTGG CCATGGCTTG CACTTCCCAA
GCCCAGGCCA TGAACCTCAC CGAAGCGATT CAGAGCACCA TCGCTACCCA CCCCGAACTG
GCCTCGCGCG TGGATGCGCG CCTGTCAGCT GATGAACAGG TGAAGGTCGC CAAGGGCGGC
TTCTATCCGT CGGTGGATCT GAACGCTGCC TACGGGCGCG GCTATAGCGA CAACACCAAC
ACCCGGGCTT TCGGTAACCA CCACACCGAA ATCCTCAATT ACACCCAGTC CGAGCTGCGT
CTGCGGCAGA TGCTGTTCGA CGGTTTCAAC ACTGCAAACG AAGTCGAGCG CACCAAGGGC
GTTTCCAACT CGCGCGCCTA TTACGCCCAG GGCACCGCCC AGGACCTGGC GCTGCGCACC
ATCGAGGTCT ACCTCGAAGT GCTCAAGCGC CGTGAACTGG TGACTCTGGC CAGGAACAAC
CTGCAGGCGC ACTTGCGGGT CAACGACCAG ATCGGCCTGC GCACCGAGCG CGGCGTGGGC
AGCACCGCCG ACTCCGATCA ATCGGTCGCC CGTAAGGCGC TGGCGCAGAA CAACCTCGAC
ACTGCCGAAG TCGATCTGGC CGACGCCGAG TCGAACTTCT ACAGCGTGGT CGGACGCATG
CCCGATGAGC TGGAAACCCC CGCCTCGACC CGCGGCGAGT TGCCCGCCAC CTTGCCCGAA
GCCCAGCAGA GCATGGTCGA GAACAACCCG TACCTGAAAT CCGCCCAGGC TGACGTGCAG
TCGGCCGAGA GCCAGTATGA AGTTGCCAAG TCGCCGTTCT ATCCACGCTT CGACGCAGAA
GCCGCCGTCG GCGCCAACAA CAACGTGCAG GGTGACGAGG GCCACGACAA CGAATGGCGG
GTCGGCGTGG TGATGAACTA CAACCTGTTC CGTGGCGGCA GCGACAAGGC GCGACTGGCT
TCCGACGCGC ACCAGATCAA CCAGGCGATG GACATCCGCA ACAACGCCCT GCGCCAGCTC
AACGAGAACA TTCACCTGGC GTGGAACGCC ATGCTCAACG CCAAGAAACA GACCCCGACC
GCCCGCGAAT ACGCCGAGAC CACCAAGCGT GTGCGCGCCG CGTATCAGGA TCAGTTCGGC
CTCGGCCAGC GCACCCTGCT CGACCTGCTC GACAGCGAAA ACGAGCTGTA CAACGCCAAC
CGTCGCTACA CCGAAATCCG CTACACCGAG GAATATTCGA TGTACCGCGT GCTGGCGAAC
ATGGGCCAGT TGTTGAACAA GCAGCGGGTT GTGTTACCAG CCGATGCGAT TGCCGCGACC
GAGGTGAAGA ACGAAGCACG CTTGCCTGAA CTGAAGTAG
|
|---|
| Protein sequence | MRVLTPLCSA VLLAMACTSQ AQAMNLTEAI QSTIATHPEL ASRVDARLSA DEQVKVAKGG
FYPSVDLNAA YGRGYSDNTN TRAFGNHHTE ILNYTQSELR LRQMLFDGFN TANEVERTKG
VSNSRAYYAQ GTAQDLALRT IEVYLEVLKR RELVTLARNN LQAHLRVNDQ IGLRTERGVG
STADSDQSVA RKALAQNNLD TAEVDLADAE SNFYSVVGRM PDELETPAST RGELPATLPE
AQQSMVENNP YLKSAQADVQ SAESQYEVAK SPFYPRFDAE AAVGANNNVQ GDEGHDNEWR
VGVVMNYNLF RGGSDKARLA SDAHQINQAM DIRNNALRQL NENIHLAWNA MLNAKKQTPT
AREYAETTKR VRAAYQDQFG LGQRTLLDLL DSENELYNAN RRYTEIRYTE EYSMYRVLAN
MGQLLNKQRV VLPADAIAAT EVKNEARLPE LK
|
|---|
| |