| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_1297 |
|---|
| Symbol | |
|---|
| ID | 3717373 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | - |
|---|
| Start bp | 1472810 |
|---|
| End bp | 1475101 |
|---|
| Gene Length | 2292 bp |
|---|
| Protein Length | 763 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | |
|---|
| Product | glycoside hydrolase family protein |
|---|
| Protein accession | YP_347029 |
|---|
| Protein GI | 77457524 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00926582 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAGC TGTGTTTGCT GGGCCTGTTC GTCAGCCTGG CCAGTCATCA AGTACTGGCC
GCCACGACCC CGGTACCCCT GGAAAACAAG GACGCGTTCA TCAGTAACCT GATGAAGCAA
ATGACCCTCG ACGAGAAGAT CGGCCAGTTG CGCCTGATCA GCATCGGCCC GGAAATGCCC
CGCGAGCTGA TCCGCAAAGA GATTGCTGCC GGCAACATCG GCGGCACCTT CAACTCGATC
ACCCGCCCGG AAAACCGCCC GATGCAGGAC GCTGCCATGC GCAGCCGCCT GAAGATTCCG
ATGTTTTTCG CGTACGACGT GATCCACGGT CACCGTACGA TTTTCCCGAT TCCGCTGGCC
CTGGCATCGA GCTGGGACAT GGACGCCATT GGCCGGTCCG GGCGCATTGC CGCCAAAGAG
GCCGCCGCCG ACAGCCTCGA CATCACCTTC GCGCCGATGG TCGACATCTC CCGCGACCCG
CGCTGGGGCC GCAGCTCCGA AGGTTTCGGT GAAGACACTT ATCTGACCTC GCGCATCGCC
AAAGTCATGG TCAAGGCTTA TCAGGGCGAG ACCCCGAGCG CCGCCGACAG CATCATGGCC
AGCGTCAAGC ACTTCGCCCT GTACGGCGCG GTCGAGGGTG GTCGCGACTA CAACACCGTC
GACATGAGCC CGGTGAAGAT GTACCAGGAC TACCTGCCAC CGTACCGCGC CGCGATTGAT
GCCGGCGCCG GTGGCGTGAT GGTCGCGCTG AACTCGATCA ACGGTATCCC GGCCACCGCC
AACACCTGGC TGATGAACGA CCTGCTGCGC AAGGACTGGG GCTTCAAGGG CCTGGCGGTC
AGCGACCACG GCGCGATCTT CGAACTGATC AAGCACGGCG TGGCCCGCGA CGGTCGTGAA
GCGGCGAAGC TGGCGATCAA GGCCGGCATC GACATGAGCA TGAACGACAC CCTGTACGGC
AAAGAGCTGC CTGGGCTGCT CAAGTCCGGC GAGATCGAAC AGAAGGACAT CGACAACGCG
GTGCGTGAAG TGCTCGCTGC CAAGTACGAC ATGGGCCTGT TCAAGGACCC GTACCTGCGC
ATCGGCAAGG CTGAAGACGA TCCGGCCGAC ACCTACGCCG ACAGCCGTCT GCACCGCGCC
GACGCCCGTG AAGTGGCGCG TCGCAGCCTG GTGCTGCTGA AGAACCGGAA CGAAACCCTG
CCGCTGAAGA AAACCGCGAA AGTCGCGCTG GTCGGCCCGC TGGCCAAGGC CCCGATCGAC
ATGATGGGCA GTTGGGCAGC CGCCGGTCGT CCGGCGCAAT CGGTGACCCT GTTCGACGGC
ATGAGCAATG TGATCGGCGA CAAGGCGAAC CTGATCTACG CCCGTGGCGC CAACATCACC
AGCGACAAGA AGGTTCTCGA CTACCTGAAC TTCCTCAACT TCGACGCCCC GGAAGTGGTC
GATGACCCGC GTCCGGCCAA CGTGCTGATC GACGAAGCGG TGAAAGCCGC CAAGGTCGCC
GACATTGTGG TTGCAGCGGT GGGCGAGTCC CGTGGCATGT CTCACGAATC GTCGAGCCGT
ACCGACCTGA ACATCCCGGA AAACCAGCGT GAGCTGATCC GTGCCCTGAA AGCCACCGGC
AAGCCGTTGG TGCTGGTGCT GATGAACGGC CGTCCGCTGA CCATCCTCGA AGAGAAAGAA
CAGGCTGACG CGATTCTGGA AACCTGGTTC AGCGGCACCG AAGGCGGCAA TGCCATCGCC
GACGTGCTGT TCGGCGACTA CAACCCGTCG GGCAAACTGC CGGTGACCTT CCCGCGTTCC
GTGGGCCAGA TCCCGACCTA CTACAACCAC TTGAGCATTG GCCGGCCGTT CACGCCGGGC
AAACCGGGCA ACTACACCTC GCAGTACTTC GATGACACCA CCGGTCCCCT GTTCCCGTTC
GGTTTCGGTC TGAGCTACAC CGATTTCAGC CTGAGCGACA TGGCGCTGTC CTCGACCACC
CTGAACGCCA CCGGCAAGCT CGACGCCAGT GTCACGGTCA AGAACACCGG CAAGCGTGAC
GGCGAAACCG TGGTGCAGCT GTACATCCAG GACGTCACCG GTTCGATGAT CCGTCCGGTC
AAGGAGCTGA AGAACTTCCA GAAAATCATG CTCAAGGCCG GCGAGCAGAA GGTTGTGCAC
TTCACCATCA CCGAAGATGA CCTGAAGTTC TACAACGCCC AGCTCAAGTA CGCGGCCGAG
CCTGGCAAGT TCAACGTGCA GATCGGCCTG GATTCCCAGG ACGTGACGCA GCAGAGCTTT
GAACTGCTGT AA
|
|---|
| Protein sequence | MKKLCLLGLF VSLASHQVLA ATTPVPLENK DAFISNLMKQ MTLDEKIGQL RLISIGPEMP
RELIRKEIAA GNIGGTFNSI TRPENRPMQD AAMRSRLKIP MFFAYDVIHG HRTIFPIPLA
LASSWDMDAI GRSGRIAAKE AAADSLDITF APMVDISRDP RWGRSSEGFG EDTYLTSRIA
KVMVKAYQGE TPSAADSIMA SVKHFALYGA VEGGRDYNTV DMSPVKMYQD YLPPYRAAID
AGAGGVMVAL NSINGIPATA NTWLMNDLLR KDWGFKGLAV SDHGAIFELI KHGVARDGRE
AAKLAIKAGI DMSMNDTLYG KELPGLLKSG EIEQKDIDNA VREVLAAKYD MGLFKDPYLR
IGKAEDDPAD TYADSRLHRA DAREVARRSL VLLKNRNETL PLKKTAKVAL VGPLAKAPID
MMGSWAAAGR PAQSVTLFDG MSNVIGDKAN LIYARGANIT SDKKVLDYLN FLNFDAPEVV
DDPRPANVLI DEAVKAAKVA DIVVAAVGES RGMSHESSSR TDLNIPENQR ELIRALKATG
KPLVLVLMNG RPLTILEEKE QADAILETWF SGTEGGNAIA DVLFGDYNPS GKLPVTFPRS
VGQIPTYYNH LSIGRPFTPG KPGNYTSQYF DDTTGPLFPF GFGLSYTDFS LSDMALSSTT
LNATGKLDAS VTVKNTGKRD GETVVQLYIQ DVTGSMIRPV KELKNFQKIM LKAGEQKVVH
FTITEDDLKF YNAQLKYAAE PGKFNVQIGL DSQDVTQQSF ELL
|
|---|
| |