Gene Pfl01_1211 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPfl01_1211 
Symbol 
ID3717060 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas fluorescens Pf0-1 
KingdomBacteria 
Replicon accessionNC_007492 
Strand
Start bp1382705 
End bp1384393 
Gene Length1689 bp 
Protein Length562 aa 
Translation table11 
GC content64% 
IMG OID 
ProductATP-dependent DNA ligase 
Protein accessionYP_346943 
Protein GI77457438 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.837533 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGACT TCGCCGGGTT GTACGCCGAA CTCGACGCCA CCACCTCCAG CAACGCCAAA 
CTGGCGGCCA TGCAAACCTA CTTCGCCCAG GCGCAACCGC AGGATGCCGC TTGGGCGGTG
TACTTCTTGT CCGGCGGTCG GCCGCGGCAA CTGGTGCCGG TGCGGATCCT GCGCGATCTC
GCGGTCGAAA TGTCCGGGTT GGCGCCATGG CTGTTCGAGG AGAGCTATCA AGCGGTCGGC
GACCTGGCGG AAACCATCTC GCTGGTGTTG CCGGAACATC CATACACCTC CGAGGCCGGC
CTCGCCGAAT GGATCGAAGA CAAACTGCTG CCCCTGCGCG GTGAAACCCC GGAATACCTC
GCCCATCAGT TGCCCGCACT GTGGGCGCAA CTGGATCGGC CGAGCCTGAT GCTGTGCATC
AAGTTGATCA CCGGCAGCTT CCGGGTCGGC GTATCCAAGC TGCTGGTGAC CCGCGCTCTG
GCTTCCATGG CCGGGCTCGA CAGCAAGCGA GTGGCGCAAC GGCTGGTGGG TTACACCGAC
CTGTCCAACC GGCCGAACGC TGCCAGTTAC CTGAAACTGA TCGCCCCCGA ATCCAGCGAC
GAGCATGCCC AGCGCGGCGG CCAGCCCTAC CCGTTCTTCC TCGCCCACGC GCTGGCGCAA
CCGGTGGAAA CCTTCGAAGC CCTGCTCGGG CCTGCCAGTA ACTGGCAGGT GGAATGGAAG
TGGGATGGCA TTCGCGCGCA AGTGGTCAAG CGCGACGGAA AACTGTGGGT CTGGTCCCGG
GGCGAAGAAC TGGTCACCGA ACGCTTTCCC GAACTCGACA CACTGGTGCA CGGGTTGCCC
GACGGCACGG TGATCGACGG CGAAATCGTG GTCTGGAAAA ACCGGCGCCC GGTCACCGAA
GATGCTTTCG ATCCGCAGTC GACAGAAGCT CCGGCGGTGC AACCCTTCGC GCTGTTGCAG
CAACGGATTG GCCGTAAATC GCTGGACCGG AAAATCCTTG AAGACGCGCC GGTGGTGGTA
CTCGCCTATG ACCTGCTCGA ATGGCAGGGC GAAGACTGGC GCAACCAGCC CCAGGCCAGA
CGTCGTGAGC AACTGGAGCA GGTCATCGCC CGCTGCAACA ACCCGGTGCT GCTGCCTTCG
CCGATTCTGA CGGGTGATGA CTGGTTCGAC CTCGCCCGCC AGCGCGAAGC CTCCAGACGC
CTGGGGGTCG AAGGCATGAT GCTCAAGGCC AGGGATGCGA TGTATGGCGT CGGTCGCACC
AAGGACATGG GCGTGTGGTG GAAATGGAAG GTCGACCCGT TCAGCGTCGA CGCGGTGCTG
ATCTACGCCC AGCGCGGTCA TGGCCGGCGC GCCAGCCTCT ACAGCGATTA CACCTTTGCG
GTGTGGGACG GCCCGCCCGG TGCCAGTGCG CGGGCGTTGG TGCCCTTCGC CAAGGCCTAT
TCTGGGCTGA CCGACGCGGA AATGCGCGAA GTCGACAGCA TCGTGCGCAA GACCACCGTG
GAAAAATTCG GTCCGGTCAG CAGCGTGAAG CCGAGCCTTG TGTTCGAACT GGGTTTCGAA
GGCATCGCCC TCTCCCGTCG GCACAAGAGC GGCATCGCCG TGCGCTTCCC GCGCATGCTG
CGCTGGCGCC AGGACAAGAC CGTGGACGAG GCCGACAGCC TGGCGACCCT GCAAAACCTG
TTGGTCTGA
 
Protein sequence
MKDFAGLYAE LDATTSSNAK LAAMQTYFAQ AQPQDAAWAV YFLSGGRPRQ LVPVRILRDL 
AVEMSGLAPW LFEESYQAVG DLAETISLVL PEHPYTSEAG LAEWIEDKLL PLRGETPEYL
AHQLPALWAQ LDRPSLMLCI KLITGSFRVG VSKLLVTRAL ASMAGLDSKR VAQRLVGYTD
LSNRPNAASY LKLIAPESSD EHAQRGGQPY PFFLAHALAQ PVETFEALLG PASNWQVEWK
WDGIRAQVVK RDGKLWVWSR GEELVTERFP ELDTLVHGLP DGTVIDGEIV VWKNRRPVTE
DAFDPQSTEA PAVQPFALLQ QRIGRKSLDR KILEDAPVVV LAYDLLEWQG EDWRNQPQAR
RREQLEQVIA RCNNPVLLPS PILTGDDWFD LARQREASRR LGVEGMMLKA RDAMYGVGRT
KDMGVWWKWK VDPFSVDAVL IYAQRGHGRR ASLYSDYTFA VWDGPPGASA RALVPFAKAY
SGLTDAEMRE VDSIVRKTTV EKFGPVSSVK PSLVFELGFE GIALSRRHKS GIAVRFPRML
RWRQDKTVDE ADSLATLQNL LV